BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030144
         (375 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containi...   107   8e-22
emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]   107   8e-22
ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containi...   106   2e-21
ref|XP_003530996.1| PREDICTED: pentatricopeptide repeat-containi...   104   7e-21
emb|CBI41008.3| unnamed protein product [Vitis vinifera]              104   9e-21

>ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial [Vitis vinifera]
          Length = 383

 Score =  107 bits (268), Expect = 8e-22
 Identities = 61/123 (49%), Positives = 80/123 (65%)
 Frame = -3

Query: 370 MSSSLSRLHRIFASPSSKPLANPTAPTRKDLIDNLFKEKTLAILVENFKKLSARPWFRKN 191
           MS    RL+R F S S+   A  T    + +  ++++E+ L  LV+ FKK S    FR  
Sbjct: 1   MSFLSRRLYRAF-STSTAATAQATG-NLESVFKDIYRERNLKRLVQKFKKSSELDRFRTK 58

Query: 190 DKIYVKVIRRLALAKELPKIEEVLEHQKKFDDITNEGFAMRLISLYGKAGMFRHAFKLFD 11
             IY + +RRLA AK    IEE+LE QKK+ DI+ EGFA+RLISLYGK+GMF HAFK+FD
Sbjct: 59  TGIYEETVRRLASAKRFRWIEEILEEQKKYKDISREGFAVRLISLYGKSGMFDHAFKVFD 118

Query: 10  DMP 2
           +MP
Sbjct: 119 EMP 121


>emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]
          Length = 383

 Score =  107 bits (268), Expect = 8e-22
 Identities = 61/123 (49%), Positives = 80/123 (65%)
 Frame = -3

Query: 370 MSSSLSRLHRIFASPSSKPLANPTAPTRKDLIDNLFKEKTLAILVENFKKLSARPWFRKN 191
           MS    RL+R F S S+   A  T    + +  ++++E+ L  LV+ FKK S    FR  
Sbjct: 1   MSFLSRRLYRAF-STSTAATAQATG-NLESVFKDIYRERNLKRLVQKFKKSSELDRFRTK 58

Query: 190 DKIYVKVIRRLALAKELPKIEEVLEHQKKFDDITNEGFAMRLISLYGKAGMFRHAFKLFD 11
             IY + +RRLA AK    IEE+LE QKK+ DI+ EGFA+RLISLYGK+GMF HAFK+FD
Sbjct: 59  TGIYEETVRRLASAKRFRWIEEILEEQKKYKDISREGFAVRLISLYGKSGMFDHAFKVFD 118

Query: 10  DMP 2
           +MP
Sbjct: 119 EMP 121


>ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial-like [Vitis vinifera]
          Length = 382

 Score =  106 bits (265), Expect = 2e-21
 Identities = 60/123 (48%), Positives = 80/123 (65%)
 Frame = -3

Query: 370 MSSSLSRLHRIFASPSSKPLANPTAPTRKDLIDNLFKEKTLAILVENFKKLSARPWFRKN 191
           MS    RL+R F S S+   A  T    + +  ++++E+ L  LV+ FKK S    FR  
Sbjct: 1   MSFLSRRLYRAF-STSTAATAQATG-NLESVFKDIYRERNLKRLVQKFKKSSELDRFRTK 58

Query: 190 DKIYVKVIRRLALAKELPKIEEVLEHQKKFDDITNEGFAMRLISLYGKAGMFRHAFKLFD 11
             IY + +RRLA AK    IEE+LE QKK+ DI+ EGFA+RLI+LYGK+GMF HAFK+FD
Sbjct: 59  TGIYEETVRRLASAKRFRWIEEILEEQKKYKDISREGFAVRLITLYGKSGMFDHAFKVFD 118

Query: 10  DMP 2
           +MP
Sbjct: 119 EMP 121


>ref|XP_003530996.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
           mitochondrial-like [Glycine max]
          Length = 381

 Score =  104 bits (260), Expect = 7e-21
 Identities = 54/116 (46%), Positives = 74/116 (63%)
 Frame = -3

Query: 349 LHRIFASPSSKPLANPTAPTRKDLIDNLFKEKTLAILVENFKKLSARPWFRKNDKIYVKV 170
           LHR F + +          + K + ++L+KE  L  +VE FKK S    FRK   IY   
Sbjct: 5   LHRAFCTATEPATTATVTVSIKSISEDLYKEVKLKNVVEKFKKASDIDRFRKKTGIYEDT 64

Query: 169 IRRLALAKELPKIEEVLEHQKKFDDITNEGFAMRLISLYGKAGMFRHAFKLFDDMP 2
           +RRLA A+    I ++LEHQK++ DI+NEGF+ RLISLYGK+GM +HA K+FD+MP
Sbjct: 65  VRRLAGARRFRWIRDILEHQKQYSDISNEGFSARLISLYGKSGMTKHARKVFDEMP 120


>emb|CBI41008.3| unnamed protein product [Vitis vinifera]
          Length = 379

 Score =  104 bits (259), Expect = 9e-21
 Identities = 54/109 (49%), Positives = 74/109 (67%), Gaps = 5/109 (4%)
 Frame = -3

Query: 313 LANPTAPTR-----KDLIDNLFKEKTLAILVENFKKLSARPWFRKNDKIYVKVIRRLALA 149
           L +P+A  +     + +  ++++E+ L  LV+ FKK S    FR    IY + +RRLA A
Sbjct: 21  LVSPSATAQATGNLESVFKDIYRERNLKRLVQKFKKSSELDRFRTKTGIYEETVRRLASA 80

Query: 148 KELPKIEEVLEHQKKFDDITNEGFAMRLISLYGKAGMFRHAFKLFDDMP 2
           K    IEE+LE QKK+ DI+ EGFA+RLISLYGK+GMF HAFK+FD+MP
Sbjct: 81  KRFRWIEEILEEQKKYKDISREGFAVRLISLYGKSGMFDHAFKVFDEMP 129