BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030139
         (259 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|2...   103   2e-20
ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containi...    91   8e-17
emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]    91   8e-17
ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containi...    90   2e-16
ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat...    62   5e-08

>ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|222841170|gb|EEE78717.1|
           predicted protein [Populus trichocarpa]
          Length = 663

 Score =  103 bits (256), Expect = 2e-20
 Identities = 47/85 (55%), Positives = 65/85 (76%)
 Frame = -1

Query: 256 ACMVEEGKDFFKCIRETKVEHRCLMISLLVRARLFDEAKDFVEEHHLEWNPDVQRALLDG 77
           ACMVEEGK +F CI+E  + H  LM+SLL RA LFDEA+ F+EEHH+E + +V RALLDG
Sbjct: 411 ACMVEEGKFYFNCIKEPNITHYALMVSLLARACLFDEARAFMEEHHIERHAEVLRALLDG 470

Query: 76  CRIYQDKKMAKQIVERLIELEPLNS 2
           C ++  + + KQ+ E+L +LEPL++
Sbjct: 471 CWMHHRRNIGKQVFEQLCDLEPLDA 495


>ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 662

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 43/86 (50%), Positives = 63/86 (73%)
 Frame = -1

Query: 259 TACMVEEGKDFFKCIRETKVEHRCLMISLLVRARLFDEAKDFVEEHHLEWNPDVQRALLD 80
           TA +VE+G+ +F CI   K  H  LM++LL R  LFDEA+ F+EEH LE + +V RALLD
Sbjct: 409 TARLVEQGRFYFNCITAPKSRHYALMVALLSRVGLFDEARVFMEEHKLEGHVEVLRALLD 468

Query: 79  GCRIYQDKKMAKQIVERLIELEPLNS 2
           GCRI+ + + AK+++E+L +L+ LN+
Sbjct: 469 GCRIHHNMRTAKRVIEQLCDLQTLNA 494


>emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]
          Length = 734

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 43/86 (50%), Positives = 63/86 (73%)
 Frame = -1

Query: 259 TACMVEEGKDFFKCIRETKVEHRCLMISLLVRARLFDEAKDFVEEHHLEWNPDVQRALLD 80
           TA +VE+G+ +F CI   K  H  LM++LL R  LFDEA+ F+EEH LE + +V RALLD
Sbjct: 481 TARLVEQGRFYFNCITAPKSRHYALMVALLSRVGLFDEARVFMEEHKLEGHVEVLRALLD 540

Query: 79  GCRIYQDKKMAKQIVERLIELEPLNS 2
           GCRI+ + + AK+++E+L +L+ LN+
Sbjct: 541 GCRIHHNMRTAKRVIEQLCDLQTLNA 566


>ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 629

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 42/86 (48%), Positives = 62/86 (72%)
 Frame = -1

Query: 259 TACMVEEGKDFFKCIRETKVEHRCLMISLLVRARLFDEAKDFVEEHHLEWNPDVQRALLD 80
           TA MV+EG  +F CI +  V H  L ++LL RA   DEA+ FVE+  L+ +P++ RALLD
Sbjct: 376 TANMVDEGDSYFSCITKPTVAHIALKVALLARAGRLDEARTFVEKKKLDKHPEILRALLD 435

Query: 79  GCRIYQDKKMAKQIVERLIELEPLNS 2
           GCR ++ +K+ K+I+E+L +LEPLN+
Sbjct: 436 GCRNHRQQKLGKRIIEQLCDLEPLNA 461


>ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
 Frame = -1

Query: 247 VEEGKDFFKCIRET-----KVEHRCLMISLLVRARLFDEAKDFVEEHHLEWNPDVQRALL 83
           V EG+ FF  ++        +EH   M+ LL RA L +EA   +    ++ N  V  ALL
Sbjct: 433 VNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALL 492

Query: 82  DGCRIYQDKKMAKQIVERLIELEPLNS 2
            GC++++D  +A+Q++++LIELEP NS
Sbjct: 493 GGCKLHKDTHLAEQVLKKLIELEPWNS 519