BLASTX nr result

ID: Coptis25_contig00030103 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030103
         (1263 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   201   3e-49
ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2...   175   3e-41
ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...   173   7e-41
ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|2...   173   1e-40
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]           150   7e-34

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
            predicted protein [Populus trichocarpa]
          Length = 517

 Score =  201 bits (511), Expect = 3e-49
 Identities = 115/346 (33%), Positives = 171/346 (49%), Gaps = 4/346 (1%)
 Frame = -1

Query: 1254 NIAANLKHIWNLVS-GQSTLWTQWIKKNLIKDRNFWQLKVPNDCSWVWRNILRNRKDAKF 1078
            N  A LKHIWNL +    ++W+ WI+ NL++ RNFW +K P +CSW W  IL+ R  A  
Sbjct: 170  NKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWP 229

Query: 1077 IAHHQIGDGRDTKFWLDPWHPMGILREYFPISLTYDSTCNLNASVANMIEDGRWNAPWRV 898
               + IGDG  T  W D WHP   L + +     YDS    NA V  +I++  W  P   
Sbjct: 230  KMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQ 289

Query: 897  RVHLPDIITYM-XXXXXXXXXXXXXVWTASQKGDFNLKDTFHCVRETKVPISWYSIVWFQ 721
             +    II  +              VW  S    F++K  +  +R  +  + W+ IVWF+
Sbjct: 290  AIGWHPIIEAIPSNSNPKMGQKDELVWLDSPNHRFSVKVAWEQLRRHRQMVEWHDIVWFK 349

Query: 720  NRIPRHAFIAWLTLKEGLKTLVKLKEWKKVQDDTCVLCWKERETEEHLFYECLFSQFIWQ 541
            N +PRH+F+ W+ +++ L T  KL  +     + C LC +  E   HLF+EC +++ IW 
Sbjct: 350  NAVPRHSFLLWMAVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWW 409

Query: 540  TLLVHAGYNVPSGTT-WLEEISWIIQTAKGKGYKQDALKLMFNGFIYNIWQERNRRIFEH 364
             +      ++P  T  W E I W   +  GK +   + KL F   +Y++WQERN RIF  
Sbjct: 410  DVCDRC--DIPRMTKGWDEWIRWATVSWHGKSFVNFSCKLSFAATVYHVWQERNARIFAG 467

Query: 363  TSKTAQQVGKLIVRDVRCKLQSIKVKVEEGPERNRFMQLWNI-TLD 229
             S+T   V   I   +R KL  ++  V    E  R  + W + T+D
Sbjct: 468  MSRTPNLVLNQIECIIRDKLDLMR-NVVPTNENTRIQRAWRVNTID 512


>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
            predicted protein [Populus trichocarpa]
          Length = 1386

 Score =  175 bits (443), Expect = 3e-41
 Identities = 103/321 (32%), Positives = 154/321 (47%), Gaps = 3/321 (0%)
 Frame = -1

Query: 1182 KKNLIKDRNFWQLKVPNDCSWVWRNILRNRKDAKFIAHHQIGDGRDTKFWLDPWHPMGIL 1003
            + NL++ RNFW +K P +CSW W  IL+ R  A     + IGDG  T  W D WHP   L
Sbjct: 1068 RSNLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPL 1127

Query: 1002 REYFPISLTYDSTCNLNASVANMIEDGRWNAPWRVRVHLPDIITYM-XXXXXXXXXXXXX 826
             + +     YDS    NA V  +I++  W  P    +    II  +              
Sbjct: 1128 ADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDEI 1187

Query: 825  VWTASQKGDFNLKDTFHCVRETKVPISWYSIVWFQNRIPRHAFIAWLTLKEGLKTLVKLK 646
            VW  S    F +K  +  +R  +  + W+ IVWF+N +PRH+F+ W+ +++ L T  KL 
Sbjct: 1188 VWLDSPNHRFLVKVAWEHLRRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLY 1247

Query: 645  EWKKVQDDTCVLCWKERETEEHLFYECLFSQFIWQTLLVHAGYNVPSGTT-WLEEISWII 469
             +     + C LC +  E   HLF+EC +++ IW  +      ++P  T  W E I W  
Sbjct: 1248 RFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRC--DIPRMTKGWDEWIRWAT 1305

Query: 468  QTAKGKGYKQDALKLMFNGFIYNIWQERNRRIFEHTSKTAQQVGKLIVRDVRCKLQSIKV 289
             +  GK +   + KL F   +Y++WQERN RIF   S+T   V   I   +R KL  ++ 
Sbjct: 1306 VSWHGKSFVNFSRKLSFAATVYHVWQERNARIFAGMSRTPNLVLNQIECIIRDKLDLMR- 1364

Query: 288  KVEEGPERNRFMQLWNI-TLD 229
             V    E  R  + W + T+D
Sbjct: 1365 NVVPTNENTRIQRAWRVNTID 1385


>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
            predicted protein [Populus trichocarpa]
          Length = 1046

 Score =  173 bits (439), Expect = 7e-41
 Identities = 105/340 (30%), Positives = 162/340 (47%), Gaps = 3/340 (0%)
 Frame = -1

Query: 1239 LKHIWNLVSGQSTLWTQWIKKNLIKDRNFWQLKVPNDCSWVWRNILRNRKDAKFIAHHQI 1060
            +K +W+  SG   +       NL++ RNFW +K P +CS  W  IL+ R  A     + I
Sbjct: 715  VKKVWDQNSGGCPI------SNLLRGRNFWTIKTPQNCSSAWGKILKLRSLAWPKMKYII 768

Query: 1059 GDGRDTKFWLDPWHPMGILREYFPISLTYDSTCNLNASVANMIEDGRWNAPWRVRVHLPD 880
            GDG  T  W D WHP   L + +     YDS    NA V  +I++  W  P    +    
Sbjct: 769  GDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHP 828

Query: 879  IITYMXXXXXXXXXXXXXV-WTASQKGDFNLKDTFHCVRETKVPISWYSIVWFQNRIPRH 703
            II  +             + W  S    F++K  +  +R  +  + W+ IVWF+N +PRH
Sbjct: 829  IIEAIPSNSNPKMGQKDEIIWLDSPNHRFSVKVAWEQLRRHRQLVEWHDIVWFKNAVPRH 888

Query: 702  AFIAWLTLKEGLKTLVKLKEWKKVQDDTCVLCWKERETEEHLFYECLFSQFIWQTLLVHA 523
            +F+ W+ +++ L T  KL  +     + C LC +  E   HLF+EC +++ IW  +    
Sbjct: 889  SFLLWMVVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRC 948

Query: 522  GYNVPSGTT-WLEEISWIIQTAKGKGYKQDALKLMFNGFIYNIWQERNRRIFEHTSKTAQ 346
              ++P  T  W E I W   +  GK +   + KL F   +Y++WQERN RIF   S+T+ 
Sbjct: 949  --DIPRMTKGWDEWIRWATVSWHGKSFINFSRKLSFAATVYHVWQERNARIFAGLSRTSN 1006

Query: 345  QVGKLIVRDVRCKLQSIKVKVEEGPERNRFMQLWNI-TLD 229
             V   I   +R KL  ++  V    E  R  + W + T+D
Sbjct: 1007 LVFNQIECIIRDKLDLMR-NVVPTNENKRIQRAWRVNTID 1045


>ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|222849970|gb|EEE87517.1|
            predicted protein [Populus trichocarpa]
          Length = 331

 Score =  173 bits (438), Expect = 1e-40
 Identities = 102/323 (31%), Positives = 155/323 (47%), Gaps = 3/323 (0%)
 Frame = -1

Query: 1188 WIKKNLIKDRNFWQLKVPNDCSWVWRNILRNRKDAKFIAHHQIGDGRDTKFWLDPWHPMG 1009
            WI   ++  RNFW +K P +CSW W  IL+ R  A     + IGDG  T  W D WHP  
Sbjct: 14   WI---IVISRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHS 70

Query: 1008 ILREYFPISLTYDSTCNLNASVANMIEDGRWNAPWRVRVHLPDIITYMXXXXXXXXXXXX 829
             L + +     YDS    NA V  +I++  W  P    +    II  +            
Sbjct: 71   PLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKD 130

Query: 828  XV-WTASQKGDFNLKDTFHCVRETKVPISWYSIVWFQNRIPRHAFIAWLTLKEGLKTLVK 652
             + W  S    F++K  +  +R  +  + W+ IVWF+N +PRH+F+ W+ +++ L T  K
Sbjct: 131  EIVWLDSPNHRFSVKVAWEQLRRHRHMVEWHDIVWFKNAVPRHSFLLWMVVQQKLTTQDK 190

Query: 651  LKEWKKVQDDTCVLCWKERETEEHLFYECLFSQFIWQTLLVHAGYNVPSGTT-WLEEISW 475
            L  +     + C LC +  E   HLF+EC +++ IW  +      ++P  T  W E I W
Sbjct: 191  LHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRC--DIPRMTKGWDEWIRW 248

Query: 474  IIQTAKGKGYKQDALKLMFNGFIYNIWQERNRRIFEHTSKTAQQVGKLIVRDVRCKLQSI 295
               +  GK +   + KL F   +Y++WQERN RIF   S+T+  V   I   +R KL  +
Sbjct: 249  ATVSWHGKSFVNFSRKLSFAATVYHVWQERNARIFAGLSRTSNLVFNQIECIIRDKLDLM 308

Query: 294  KVKVEEGPERNRFMQLWNI-TLD 229
            +  V    E  R  + W + T+D
Sbjct: 309  R-NVVPTNENKRIQRAWRVNTID 330


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score =  150 bits (379), Expect = 7e-34
 Identities = 102/349 (29%), Positives = 166/349 (47%), Gaps = 9/349 (2%)
 Frame = -1

Query: 1263 RTANIAANLKHIWNLVSGQSTLWTQWIKKNLIKDRNFWQLKVPNDC-SWVWRNILRNRKD 1087
            + AN  + LK IW ++S  S LW QW++  L++  +FW +       SW+W+ IL++R  
Sbjct: 136  KEANKVSLLKLIWRMLSSTS-LWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRAL 194

Query: 1086 AKFIAHHQIGDGRDTKFWLDPWHPMGILREYFPISLTYDSTCNLNASVANMIEDGRWNAP 907
            A     H I +G +T FW D W  +G L +        D    L+ASVA  + + R   P
Sbjct: 195  ASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHR---P 251

Query: 906  WRVR----VHLPDIITYMXXXXXXXXXXXXXVWTASQ---KGDFNLKDTFHCVRETKVPI 748
             R R    + + D+I  +              W  +    K  FN K+T+   RE K+ +
Sbjct: 252  RRHRHDTLLRIEDVIAEVRHQGLTSGEDTVR-WKGNGDIFKPCFNTKETWAATREPKLKV 310

Query: 747  SWYSIVWFQNRIPRHAFIAWLTLKEGLKTLVKLKEWKKVQDDTCVLCWKERETEEHLFYE 568
            +WY  VWF +  P+++ +AW+ +K  L T  ++  W    D +CVLC    ET +HLF+ 
Sbjct: 311  NWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFT 370

Query: 567  CLFSQFIWQTLLVHAGYNVPSGTTWLEEISWIIQTAKGKGYKQDAL-KLMFNGFIYNIWQ 391
            C +S  +W TL       +    T   E    + T K  G++   L +  F   ++++W+
Sbjct: 371  CPYSAEVWSTLTRKL---LSQHFTNRWEAILKLLTNKSLGHEVPFLTRYTFQLTLHSLWK 427

Query: 390  ERNRRIFEHTSKTAQQVGKLIVRDVRCKLQSIKVKVEEGPERNRFMQLW 244
            ERN R      + A Q+ + + + VR ++ SI  + +E    N  M  W
Sbjct: 428  ERNGRRHGEVPQAAAQMVRFLDKQVRNRISSI--QSQEDRRYNGCMTCW 474


Top