BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030083
         (1040 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277489.1| PREDICTED: putative SWI/SNF-related matrix-a...   395   e-108
ref|XP_002871139.1| SNF2 domain-containing protein [Arabidopsis ...   377   e-102
ref|NP_196132.2| DNA/RNA helicase [Arabidopsis thaliana] gi|2026...   376   e-102
sp|Q9FF61.1|SM3L1_ARATH RecName: Full=Putative SWI/SNF-related m...   376   e-102
ref|XP_002308876.1| chromatin remodeling complex subunit [Populu...   374   e-101

>ref|XP_002277489.1| PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A member 3-like 1-like
            [Vitis vinifera]
          Length = 874

 Score =  395 bits (1015), Expect = e-108
 Identities = 206/304 (67%), Positives = 236/304 (77%), Gaps = 1/304 (0%)
 Frame = -3

Query: 1029 SVVRNYSTVLSIILRLRQICDDIALYP-DMKLLLPSNNIEDVSNKPELLKKMVAMLQDGD 853
            SV+RNYSTVL IILRLRQIC D+AL P D++ LL SNNIEDVSN PELLKKMV +LQDG+
Sbjct: 567  SVMRNYSTVLGIILRLRQICTDVALCPSDLRSLLLSNNIEDVSNNPELLKKMVLVLQDGE 626

Query: 852  DFDCPICISPPSNTIITRCAHIFCRACILKALKRPNPSCPLCRQSLSESDLYLAXXXXXX 673
            DFDCPICISPP+N +IT CAHIFCR CILK LKR  P CPLCR  LS+SDL+ A      
Sbjct: 627  DFDCPICISPPTNIVITCCAHIFCRVCILKTLKRTKPCCPLCRHPLSQSDLFSAPPESTE 686

Query: 672  XXXXXXXXXXXXXSKVNAXXXXXLEDRERDPSTKSIVFSQFRKMLILLEEPLKASGFTIL 493
                         SKV          R+++PSTKS+VFSQFRKML+LLE+PLKA+GF  L
Sbjct: 687  TDNSEIPSSECTSSKVLTLLKFLSASRDQNPSTKSVVFSQFRKMLLLLEQPLKAAGFKTL 746

Query: 492  RLDGSMTAKKRAEVIEQFSNQDSCTTTVLLASLKASGTGINLTAASRVYLLEPWWNPAVE 313
            RLDGSM AK+RA+VIE+F        TVLLASLKASG GINLTAASRVYLLEPWWNPAVE
Sbjct: 747  RLDGSMNAKRRAQVIEEFGAPGPNGPTVLLASLKASGAGINLTAASRVYLLEPWWNPAVE 806

Query: 312  EQAMDRVHRIGQKKDVKIVRLITKDSIEERILALQDKKKMLAREAFRRKDGKDAGRIGME 133
            EQAMDRVHRIGQK+DVKIVRLI ++SIEERIL LQ++KK LA+EAF R+  KD   +G+E
Sbjct: 807  EQAMDRVHRIGQKEDVKIVRLIARNSIEERILELQERKKKLAKEAFGRRGLKDRREVGVE 866

Query: 132  DLRV 121
            DLR+
Sbjct: 867  DLRM 870


>ref|XP_002871139.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
            gi|297316976|gb|EFH47398.1| SNF2 domain-containing
            protein [Arabidopsis lyrata subsp. lyrata]
          Length = 861

 Score =  377 bits (968), Expect = e-102
 Identities = 190/304 (62%), Positives = 235/304 (77%), Gaps = 3/304 (0%)
 Frame = -3

Query: 1029 SVVRNYSTVLSIILRLRQICDDIALYP-DMKLLLPSNNIEDVSNKPELLKKMVAMLQDGD 853
            S++RNYSTVLSIILRLRQ+CDDI+L P +++    S ++EDV +KPELL+K++A+LQDG+
Sbjct: 552  SLMRNYSTVLSIILRLRQLCDDISLCPPELRSFTTSTSVEDVIDKPELLQKLIAVLQDGE 611

Query: 852  DFDCPICISPPSNTIITRCAHIFCRACILKALKRPNPSCPLCRQSLSESDLYLAXXXXXX 673
            DFDCPICISPP+N IITRCAHIFCRACIL+ L+R  P CPLCR SL++SDLY A      
Sbjct: 612  DFDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDLYNAPPPPPD 671

Query: 672  XXXXXXXXXXXXXS--KVNAXXXXXLEDRERDPSTKSIVFSQFRKMLILLEEPLKASGFT 499
                            KV+A     +  R+  P+TKS+VFSQFRKML+LLE PLKA+GFT
Sbjct: 672  DSNTDGEDTKSSTKSSKVSALLSLLIASRQESPNTKSVVFSQFRKMLLLLETPLKAAGFT 731

Query: 498  ILRLDGSMTAKKRAEVIEQFSNQDSCTTTVLLASLKASGTGINLTAASRVYLLEPWWNPA 319
            ILRLDG+MT KKR +VI +F N +     VLLASLKASG GINLTAASRVYLL+PWWNPA
Sbjct: 732  ILRLDGAMTLKKRTQVIGEFGNPELTGPVVLLASLKASGAGINLTAASRVYLLDPWWNPA 791

Query: 318  VEEQAMDRVHRIGQKKDVKIVRLITKDSIEERILALQDKKKMLAREAFRRKDGKDAGRIG 139
            VEEQAMDR+HRIGQK++VK++R+I +DSIEER+L LQ KKK LA EAF+R+  KD   + 
Sbjct: 792  VEEQAMDRIHRIGQKQEVKMIRMIARDSIEERVLELQQKKKNLANEAFKRRQKKDEREVN 851

Query: 138  MEDL 127
            +ED+
Sbjct: 852  VEDV 855


>ref|NP_196132.2| DNA/RNA helicase [Arabidopsis thaliana] gi|20260624|gb|AAM13210.1|
            helicase-like transcription factor-like protein
            [Arabidopsis thaliana] gi|31711770|gb|AAP68241.1|
            At5g05130 [Arabidopsis thaliana]
            gi|332003449|gb|AED90832.1| DNA/RNA helicase [Arabidopsis
            thaliana]
          Length = 862

 Score =  376 bits (965), Expect = e-102
 Identities = 189/304 (62%), Positives = 236/304 (77%), Gaps = 3/304 (0%)
 Frame = -3

Query: 1029 SVVRNYSTVLSIILRLRQICDDIALYP-DMKLLLPSNNIEDVSNKPELLKKMVAMLQDGD 853
            S++RNYSTVLSIILRLRQ+CDD++L P +++    S ++EDV++KPELL+K+VA LQDG+
Sbjct: 553  SLMRNYSTVLSIILRLRQLCDDMSLCPPELRSFTTSTSVEDVTDKPELLQKLVAALQDGE 612

Query: 852  DFDCPICISPPSNTIITRCAHIFCRACILKALKRPNPSCPLCRQSLSESDLYLAXXXXXX 673
            DFDCPICISPP+N IITRCAHIFCRACIL+ L+R  P CPLCR SL++SDLY A      
Sbjct: 613  DFDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDLYNAPPPPPD 672

Query: 672  XXXXXXXXXXXXXS--KVNAXXXXXLEDRERDPSTKSIVFSQFRKMLILLEEPLKASGFT 499
                            KV+A     +  R+ +P+TKS+VFSQFRKML+LLE PLKA+GFT
Sbjct: 673  SSNTDGEDAKSSTKSSKVSALLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFT 732

Query: 498  ILRLDGSMTAKKRAEVIEQFSNQDSCTTTVLLASLKASGTGINLTAASRVYLLEPWWNPA 319
            ILRLDG+MT KKR +VI +F N +     VLLASLKASGTGINLTAASRVYL +PWWNPA
Sbjct: 733  ILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASLKASGTGINLTAASRVYLFDPWWNPA 792

Query: 318  VEEQAMDRVHRIGQKKDVKIVRLITKDSIEERILALQDKKKMLAREAFRRKDGKDAGRIG 139
            VEEQAMDR+HRIGQK++VK++R+I ++SIEER+L LQ KKK LA EAF+R+  KD   + 
Sbjct: 793  VEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQQKKKNLANEAFKRRQKKDEREVN 852

Query: 138  MEDL 127
            +ED+
Sbjct: 853  VEDV 856


>sp|Q9FF61.1|SM3L1_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            3-like 1; Short=SMARCA3-like protein 1
            gi|10178052|dbj|BAB11535.1| helicase-like transcription
            factor-like protein [Arabidopsis thaliana]
          Length = 881

 Score =  376 bits (965), Expect = e-102
 Identities = 189/304 (62%), Positives = 236/304 (77%), Gaps = 3/304 (0%)
 Frame = -3

Query: 1029 SVVRNYSTVLSIILRLRQICDDIALYP-DMKLLLPSNNIEDVSNKPELLKKMVAMLQDGD 853
            S++RNYSTVLSIILRLRQ+CDD++L P +++    S ++EDV++KPELL+K+VA LQDG+
Sbjct: 572  SLMRNYSTVLSIILRLRQLCDDMSLCPPELRSFTTSTSVEDVTDKPELLQKLVAALQDGE 631

Query: 852  DFDCPICISPPSNTIITRCAHIFCRACILKALKRPNPSCPLCRQSLSESDLYLAXXXXXX 673
            DFDCPICISPP+N IITRCAHIFCRACIL+ L+R  P CPLCR SL++SDLY A      
Sbjct: 632  DFDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDLYNAPPPPPD 691

Query: 672  XXXXXXXXXXXXXS--KVNAXXXXXLEDRERDPSTKSIVFSQFRKMLILLEEPLKASGFT 499
                            KV+A     +  R+ +P+TKS+VFSQFRKML+LLE PLKA+GFT
Sbjct: 692  SSNTDGEDAKSSTKSSKVSALLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFT 751

Query: 498  ILRLDGSMTAKKRAEVIEQFSNQDSCTTTVLLASLKASGTGINLTAASRVYLLEPWWNPA 319
            ILRLDG+MT KKR +VI +F N +     VLLASLKASGTGINLTAASRVYL +PWWNPA
Sbjct: 752  ILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASLKASGTGINLTAASRVYLFDPWWNPA 811

Query: 318  VEEQAMDRVHRIGQKKDVKIVRLITKDSIEERILALQDKKKMLAREAFRRKDGKDAGRIG 139
            VEEQAMDR+HRIGQK++VK++R+I ++SIEER+L LQ KKK LA EAF+R+  KD   + 
Sbjct: 812  VEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQQKKKNLANEAFKRRQKKDEREVN 871

Query: 138  MEDL 127
            +ED+
Sbjct: 872  VEDV 875


>ref|XP_002308876.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222854852|gb|EEE92399.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 799

 Score =  374 bits (960), Expect = e-101
 Identities = 193/304 (63%), Positives = 231/304 (75%), Gaps = 1/304 (0%)
 Frame = -3

Query: 1032 NSVVRNYSTVLSIILRLRQICDDIALYP-DMKLLLPSNNIEDVSNKPELLKKMVAMLQDG 856
            N+++RN+STVL IILRLRQIC+D+AL P D++ LLPSN+IEDVSN PELL KMV +LQDG
Sbjct: 491  NNLMRNFSTVLCIILRLRQICNDLALCPSDLRSLLPSNSIEDVSNNPELLMKMVTVLQDG 550

Query: 855  DDFDCPICISPPSNTIITRCAHIFCRACILKALKRPNPSCPLCRQSLSESDLYLAXXXXX 676
            +DFDCPICI PP+ T+ITRCAHIFCR CILK L+R    CPLCR+ LS SDL+ A     
Sbjct: 551  EDFDCPICICPPTETVITRCAHIFCRPCILKTLQRAKQCCPLCRRPLSVSDLFSAPPESS 610

Query: 675  XXXXXXXXXXXXXXSKVNAXXXXXLEDRERDPSTKSIVFSQFRKMLILLEEPLKASGFTI 496
                          SKV+A     +  R  +P+ KS+VFSQF+KML+LLEEPLK +GF I
Sbjct: 611  GSDNANTSSRTTTSSKVSALIKLLIASRVENPARKSVVFSQFQKMLVLLEEPLKEAGFKI 670

Query: 495  LRLDGSMTAKKRAEVIEQFSNQDSCTTTVLLASLKASGTGINLTAASRVYLLEPWWNPAV 316
            LRLDGSM AKKRA+VI+QF        TVLLASLKASG GINL  ASRVYLLEPWWNPAV
Sbjct: 671  LRLDGSMNAKKRAQVIKQFGVPGPDGPTVLLASLKASGAGINLAVASRVYLLEPWWNPAV 730

Query: 315  EEQAMDRVHRIGQKKDVKIVRLITKDSIEERILALQDKKKMLAREAFRRKDGKDAGRIGM 136
            EEQAMDRVHRIGQ++DV +VRLI + SIEERIL +Q++KK LA+EAF R+  K    +G+
Sbjct: 731  EEQAMDRVHRIGQEEDVTVVRLIAQSSIEERILEMQERKKKLAKEAFGRRGTKTQREVGI 790

Query: 135  EDLR 124
            +DLR
Sbjct: 791  DDLR 794