BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030077
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containi...   146   1e-33
ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containi...   140   8e-32
emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]   140   8e-32
emb|CBI38215.3| unnamed protein product [Vitis vinifera]              139   2e-31
ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containi...   139   2e-31

>ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  146 bits (369), Expect = 1e-33
 Identities = 67/128 (52%), Positives = 92/128 (71%)
 Frame = +1

Query: 1   LGALDLGKWVHAYIDRNRVKIDVYVNTALIDMYGKCGSVEDAKRVFNNARVKDTFLCSTM 180
           LG L++GKWVHAY+ RN +  D +V  AL+DMY KCGS+++A RVF + + +D +  + M
Sbjct: 327 LGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAM 386

Query: 181 IEVLGTHGKAKEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAGVKYFFMMSEEFR 360
           I  L  HG+A  AF +FS M   GI+PN+VTF+GLL ACSH GLV  G KYFF MS++++
Sbjct: 387 IFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYK 446

Query: 361 LMPKVEHF 384
           L P+ EH+
Sbjct: 447 LRPQAEHY 454



 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
 Frame = +1

Query: 1   LGALDLGKWVHAYIDRN-RVKIDVYVNTALIDMYGKCGSVEDAKRVFNNARVKDTFLCST 177
           LG L+LG+ VH+YI     +K DV+V  AL+DMY KC  +  A +VF+   VK+    + 
Sbjct: 225 LGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNA 284

Query: 178 MIEVLGTHGKAKEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAG 324
           MI  L   G+ +EA   F  M+  G+KP++VT VG+L +C+++G+++ G
Sbjct: 285 MISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIG 333



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
 Frame = +1

Query: 19  GKWVHAY-IDRNRVKIDVYVNTALIDMYGKCGSVEDAKRVFNNARVKDTFLCSTMIEVLG 195
           G+ +HA  I    V  +VYV+  L+ +Y  CGS+ D ++VF+    +D    +T+I+   
Sbjct: 129 GQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFT 188

Query: 196 THGKAKEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAGVK 330
             G    A   F  M    ++ +  T V +L ACS++G ++ G K
Sbjct: 189 KAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQK 233


>ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  140 bits (354), Expect = 8e-32
 Identities = 65/127 (51%), Positives = 86/127 (67%)
 Frame = +1

Query: 4   GALDLGKWVHAYIDRNRVKIDVYVNTALIDMYGKCGSVEDAKRVFNNARVKDTFLCSTMI 183
           GALDLGKWVH+YID+ RV++D  +NTAL+DMY KCG +  A R+F  A  +D  + + +I
Sbjct: 373 GALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAII 432

Query: 184 EVLGTHGKAKEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAGVKYFFMMSEEFRL 363
                HG  +EA  IF+ M   G+KPND+TF+GLL ACSH GLV  G K F  M   F L
Sbjct: 433 TGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGL 492

Query: 364 MPKVEHF 384
           +P++EH+
Sbjct: 493 VPQIEHY 499



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 29/91 (31%), Positives = 49/91 (53%)
 Frame = +1

Query: 16  LGKWVHAYIDRNRVKIDVYVNTALIDMYGKCGSVEDAKRVFNNARVKDTFLCSTMIEVLG 195
           LGK +H ++ +  +  DV+V  AL+ MYG+C  VE A+ VF+    +D    STMI  L 
Sbjct: 142 LGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLS 201

Query: 196 THGKAKEAFTIFSYMRSTGIKPNDVTFVGLL 288
            + +   A  +   M    ++P++V  V ++
Sbjct: 202 RNKEFDMALELIREMNFMQVRPSEVAMVSMV 232


>emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  140 bits (354), Expect = 8e-32
 Identities = 65/127 (51%), Positives = 86/127 (67%)
 Frame = +1

Query: 4   GALDLGKWVHAYIDRNRVKIDVYVNTALIDMYGKCGSVEDAKRVFNNARVKDTFLCSTMI 183
           GALDLGKWVH+YID+ RV++D  +NTAL+DMY KCG +  A R+F  A  +D  + + +I
Sbjct: 413 GALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAII 472

Query: 184 EVLGTHGKAKEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAGVKYFFMMSEEFRL 363
                HG  +EA  IF+ M   G+KPND+TF+GLL ACSH GLV  G K F  M   F L
Sbjct: 473 TGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGL 532

Query: 364 MPKVEHF 384
           +P++EH+
Sbjct: 533 VPQIEHY 539



 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 41/107 (38%), Positives = 65/107 (60%)
 Frame = +1

Query: 4   GALDLGKWVHAYIDRNRVKIDVYVNTALIDMYGKCGSVEDAKRVFNNARVKDTFLCSTMI 183
           GAL LGK +HAYI RN   + + + TAL+DMYGKC  + +A+ +F++ + +D  + + M+
Sbjct: 312 GALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAML 371

Query: 184 EVLGTHGKAKEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAG 324
                     +AF +F  MR++G++P  VT V LL  C+  G +D G
Sbjct: 372 SAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG 418



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
 Frame = +1

Query: 16  LGKWVHAYIDRN--RVKIDVYVNTALIDMYGKCGSVEDAKRVFNNARVKDTFLCSTMIEV 189
           +GK +HAY+ RN     + V   TAL+DMY KCG +  A+++FN    K     + MI  
Sbjct: 213 MGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG 272

Query: 190 LGTHGKAKEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAG 324
                + +E   +F  M+   I PN++T + L+  C   G +  G
Sbjct: 273 CIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLG 317



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 29/91 (31%), Positives = 49/91 (53%)
 Frame = +1

Query: 16  LGKWVHAYIDRNRVKIDVYVNTALIDMYGKCGSVEDAKRVFNNARVKDTFLCSTMIEVLG 195
           LGK +H ++ +  +  DV+V  AL+ MYG+C  VE A+ VF+    +D    STMI  L 
Sbjct: 112 LGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLS 171

Query: 196 THGKAKEAFTIFSYMRSTGIKPNDVTFVGLL 288
            + +   A  +   M    ++P++V  V ++
Sbjct: 172 RNKEFDMALELIREMNFMQVRPSEVAMVSMV 202


>emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  139 bits (350), Expect = 2e-31
 Identities = 65/128 (50%), Positives = 89/128 (69%)
 Frame = +1

Query: 1   LGALDLGKWVHAYIDRNRVKIDVYVNTALIDMYGKCGSVEDAKRVFNNARVKDTFLCSTM 180
           LG L+LGKWVHAY+DRN+++ D ++  AL+DMY KCGS++ A  VF     KD +  + M
Sbjct: 319 LGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAM 378

Query: 181 IEVLGTHGKAKEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAGVKYFFMMSEEFR 360
           I  L  HG+  +A  +FS M   GI+P++VTFVG+L ACSHVGLV+ G KYF  MS  + 
Sbjct: 379 IVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYN 438

Query: 361 LMPKVEHF 384
           L P++EH+
Sbjct: 439 LRPQLEHY 446



 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 41/100 (41%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
 Frame = +1

Query: 28  VHAYIDRN-RVKIDVYVNTALIDMYGKCGSVEDAKRVFNNARVKDTFLCSTMIEVLGTHG 204
           V  YI RN  V +DV+V  AL+DMY KCG    A++VF    VK+    ++MI  L   G
Sbjct: 226 VGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKG 285

Query: 205 KAKEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAG 324
           + KE+  +F  M+  G+KP+DVT V +L +C+++G+++ G
Sbjct: 286 QFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELG 325


>ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  139 bits (350), Expect = 2e-31
 Identities = 65/128 (50%), Positives = 89/128 (69%)
 Frame = +1

Query: 1   LGALDLGKWVHAYIDRNRVKIDVYVNTALIDMYGKCGSVEDAKRVFNNARVKDTFLCSTM 180
           LG L+LGKWVHAY+DRN+++ D ++  AL+DMY KCGS++ A  VF     KD +  + M
Sbjct: 341 LGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAM 400

Query: 181 IEVLGTHGKAKEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAGVKYFFMMSEEFR 360
           I  L  HG+  +A  +FS M   GI+P++VTFVG+L ACSHVGLV+ G KYF  MS  + 
Sbjct: 401 IVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYN 460

Query: 361 LMPKVEHF 384
           L P++EH+
Sbjct: 461 LRPQLEHY 468



 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 46/109 (42%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
 Frame = +1

Query: 1   LGALDLGKWVHAYIDRN-RVKIDVYVNTALIDMYGKCGSVEDAKRVFNNARVKDTFLCST 177
           LG L LG+ +H YI RN  V +DV+V  AL+DMY KCG    A++VF    VK+    ++
Sbjct: 239 LGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNS 298

Query: 178 MIEVLGTHGKAKEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAG 324
           MI  L   G+ KE+  +F  M+  G+KP+DVT V +L +C+++G+++ G
Sbjct: 299 MISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELG 347