BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030066
         (595 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004155660.1| PREDICTED: pentatricopeptide repeat-containi...   124   2e-26
ref|XP_004134964.1| PREDICTED: uncharacterized protein LOC101207...   124   2e-26
ref|XP_004155661.1| PREDICTED: pentatricopeptide repeat-containi...   121   8e-26
ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containi...   117   1e-24
ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containi...   115   4e-24

>ref|XP_004155660.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial-like [Cucumis sativus]
          Length = 398

 Score =  124 bits (310), Expect = 2e-26
 Identities = 58/131 (44%), Positives = 86/131 (65%)
 Frame = +3

Query: 3   GERIWARMEESGIVPDIISYNAKLQGFVNVGKISEAVELVEQLQSREVKPDHGTYNILIK 182
           GE +WARME   I PD++SYNA+L+G V   +I + +EL+ +++ +E+KPD   YN LI 
Sbjct: 234 GESMWARMENKNIAPDLVSYNARLRGMVLDKRIQDGIELLAKMEEKEIKPDVHIYNTLIT 293

Query: 183 CCCDVGNLDEAKRLYDQFLKSDFAPNWTTYEALIPCVCEKGDFNLALKLCQKSLGSNCHV 362
             C  G+L+EAK+ Y +  +S+  PN TTY  L+P +CEKGDF+  L+LC++++      
Sbjct: 294 SFCKDGDLEEAKKWYYKLKESEVDPNATTYRTLLPLLCEKGDFDSGLQLCKEAINKRFVF 353

Query: 363 SAGIVQVVVDG 395
               VQ VVDG
Sbjct: 354 HTAEVQRVVDG 364


>ref|XP_004134964.1| PREDICTED: uncharacterized protein LOC101207147 [Cucumis sativus]
          Length = 2802

 Score =  124 bits (310), Expect = 2e-26
 Identities = 58/131 (44%), Positives = 86/131 (65%)
 Frame = +3

Query: 3    GERIWARMEESGIVPDIISYNAKLQGFVNVGKISEAVELVEQLQSREVKPDHGTYNILIK 182
            GE +WARME   I PD++SYNA+L+G V   +I + +EL+ +++ +E+KPD   YN LI 
Sbjct: 1091 GESMWARMENKNIAPDLVSYNARLRGMVLDKRIQDGIELLAKMEEKEIKPDVHIYNTLIT 1150

Query: 183  CCCDVGNLDEAKRLYDQFLKSDFAPNWTTYEALIPCVCEKGDFNLALKLCQKSLGSNCHV 362
              C  G+L+EAK+ Y +  +S+  PN TTY  L+P +CEKGDF+  L+LC++++      
Sbjct: 1151 SFCKDGDLEEAKKWYYKLKESEVDPNATTYRTLLPLLCEKGDFDSGLQLCKEAINKRFVF 1210

Query: 363  SAGIVQVVVDG 395
                VQ VVDG
Sbjct: 1211 HTAEVQRVVDG 1221



 Score =  123 bits (309), Expect = 2e-26
 Identities = 58/131 (44%), Positives = 88/131 (67%)
 Frame = +3

Query: 3    GERIWARMEESGIVPDIISYNAKLQGFVNVGKISEAVELVEQLQSREVKPDHGTYNILIK 182
            GER+WA ME   I PD++SYNA+L+G V   +I + +EL+ +++ +E+KPD  +YNILIK
Sbjct: 1471 GERVWATMENKNIAPDLVSYNARLRGMVLEKRIQDGIELLAKMEEKEIKPDVYSYNILIK 1530

Query: 183  CCCDVGNLDEAKRLYDQFLKSDFAPNWTTYEALIPCVCEKGDFNLALKLCQKSLGSNCHV 362
              C  G+L+EAK+ Y +  +S+  P  TTY  L+P +CE+GDF+  L+LC++++      
Sbjct: 1531 GFCQDGDLEEAKKWYYKLKESEVDPIATTYRILLPLLCEQGDFDSGLQLCKEAIDKGFVF 1590

Query: 363  SAGIVQVVVDG 395
                VQ VVDG
Sbjct: 1591 HTAEVQRVVDG 1601



 Score =  112 bits (281), Expect = 4e-23
 Identities = 54/131 (41%), Positives = 85/131 (64%)
 Frame = +3

Query: 3    GERIWARMEESGIVPDIISYNAKLQGFVNVGKISEAVELVEQLQSREVKPDHGTYNILIK 182
            GE +WARME   I PD+ISYNA+LQ  V   +I + ++L+ +++ + +KP+  +Y ILI+
Sbjct: 1888 GESMWARMENKNIAPDLISYNARLQRMVLEKRIQDGIQLLAEMEEKAIKPNVDSYYILIE 1947

Query: 183  CCCDVGNLDEAKRLYDQFLKSDFAPNWTTYEALIPCVCEKGDFNLALKLCQKSLGSNCHV 362
              C+ G+L++AK+ Y +   ++  PN + Y  L+P  CEKGDF+  L+LC++S  +    
Sbjct: 1948 GFCEDGDLEQAKQWYYKLKDNEVNPNASIYRTLLPLYCEKGDFDSGLRLCKESFDNGLVF 2007

Query: 363  SAGIVQVVVDG 395
             A  VQ VVDG
Sbjct: 2008 LAEEVQRVVDG 2018


>ref|XP_004155661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
           mitochondrial-like [Cucumis sativus]
          Length = 398

 Score =  121 bits (304), Expect = 8e-26
 Identities = 57/131 (43%), Positives = 88/131 (67%)
 Frame = +3

Query: 3   GERIWARMEESGIVPDIISYNAKLQGFVNVGKISEAVELVEQLQSREVKPDHGTYNILIK 182
           GER+WA ME   I PD++SYNA+L+G V   +I + +EL+ +++ +E+KPD  +YNILIK
Sbjct: 234 GERVWATMENKNIAPDLVSYNARLRGMVLEKRIQDGIELLAKMEEKEIKPDVYSYNILIK 293

Query: 183 CCCDVGNLDEAKRLYDQFLKSDFAPNWTTYEALIPCVCEKGDFNLALKLCQKSLGSNCHV 362
             C  G+L+EAK+ Y +  +S+  P  TTY  L+P +CE+GDF+  L+LC++++      
Sbjct: 294 GFCQDGDLEEAKKWYYKLKESEVDPIATTYRILLPLLCEQGDFDSGLQLCKEAIDKGFVF 353

Query: 363 SAGIVQVVVDG 395
               VQ VV+G
Sbjct: 354 HTAEVQRVVNG 364


>ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial-like [Vitis vinifera]
          Length = 382

 Score =  117 bits (294), Expect = 1e-24
 Identities = 56/131 (42%), Positives = 84/131 (64%)
 Frame = +3

Query: 3   GERIWARMEESGIVPDIISYNAKLQGFVNVGKISEAVELVEQLQSREVKPDHGTYNILIK 182
           GE+IW RME+  I+PDI SYNAKL G V+  ++ E + LVE++Q++ +KPD  ++N LIK
Sbjct: 219 GEKIWGRMEKKNILPDIRSYNAKLVGLVSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIK 278

Query: 183 CCCDVGNLDEAKRLYDQFLKSDFAPNWTTYEALIPCVCEKGDFNLALKLCQKSLGSNCHV 362
             C+ G +DEA   Y +  ++D  P+  T+  L+P  CEKG F+ A +LC++     C V
Sbjct: 279 GFCNDGKVDEATNWYGKMRENDCLPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLV 338

Query: 363 SAGIVQVVVDG 395
              ++Q  VDG
Sbjct: 339 DEVLLQNAVDG 349


>ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13150-like [Vitis vinifera]
          Length = 379

 Score =  115 bits (289), Expect = 4e-24
 Identities = 52/131 (39%), Positives = 89/131 (67%)
 Frame = +3

Query: 3   GERIWARMEESGIVPDIISYNAKLQGFVNVGKISEAVELVEQLQSREVKPDHGTYNILIK 182
           GE+IW  M+++ + P++ SYNAKL+G ++  ++SEAVEL++++++  +KPD  T N L+K
Sbjct: 217 GEKIWDLMKKNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMK 276

Query: 183 CCCDVGNLDEAKRLYDQFLKSDFAPNWTTYEALIPCVCEKGDFNLALKLCQKSLGSNCHV 362
             C+ GNL+EAKR Y +  +++  P   TY  LIP + EKGDF++A +LC++       +
Sbjct: 277 GFCNAGNLEEAKRWYSEIARNELPPVRATYMTLIPFLVEKGDFDMATELCKEVCSRRWLI 336

Query: 363 SAGIVQVVVDG 395
              ++Q V++G
Sbjct: 337 EPALLQQVLEG 347



 Score = 58.9 bits (141), Expect = 6e-07
 Identities = 26/98 (26%), Positives = 57/98 (58%)
 Frame = +3

Query: 36  GIVPDIISYNAKLQGFVNVGKISEAVELVEQLQSREVKPDHGTYNILIKCCCDVGNLDEA 215
           G+VPD++SYN  +  F  +G +  A+ ++++++   ++PD  T+N L+      G+  + 
Sbjct: 158 GVVPDVVSYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADG 217

Query: 216 KRLYDQFLKSDFAPNWTTYEALIPCVCEKGDFNLALKL 329
           ++++D   K++ APN  +Y A +  V  +   + A++L
Sbjct: 218 EKIWDLMKKNNVAPNVRSYNAKLRGVISENRMSEAVEL 255