BLASTX nr result

ID: Coptis25_contig00030039 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00030039
         (305 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002320330.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06
ref|XP_002320329.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06
ref|XP_002523123.1| structural constituent of cell wall, putativ...    55   5e-06
ref|XP_002523124.1| conserved hypothetical protein [Ricinus comm...    55   8e-06

>ref|XP_002320330.1| predicted protein [Populus trichocarpa] gi|222861103|gb|EEE98645.1|
           predicted protein [Populus trichocarpa]
          Length = 361

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 27/49 (55%), Positives = 35/49 (71%)
 Frame = -2

Query: 304 SSPMKECNVPTNVNMGSSGALPYSSYRLLTKKKMKLYSVGPFVYRPTKP 158
           SSP+K CNVPT++N G +GA P S+Y +L  KK+KLYS+  F Y  T P
Sbjct: 307 SSPLKTCNVPTDMNYGITGA-PLSAYHILHDKKIKLYSMRTFFYTSTTP 354


>ref|XP_002320329.1| predicted protein [Populus trichocarpa] gi|222861102|gb|EEE98644.1|
           predicted protein [Populus trichocarpa]
          Length = 265

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 27/49 (55%), Positives = 35/49 (71%)
 Frame = -2

Query: 304 SSPMKECNVPTNVNMGSSGALPYSSYRLLTKKKMKLYSVGPFVYRPTKP 158
           SSP+K CNVPT++N G +GA P S+Y +L  KK+KLYS+  F Y  T P
Sbjct: 211 SSPLKTCNVPTDMNYGITGA-PLSAYHILHDKKIKLYSMRTFFYTSTTP 258


>ref|XP_002523123.1| structural constituent of cell wall, putative [Ricinus communis]
           gi|223537685|gb|EEF39308.1| structural constituent of
           cell wall, putative [Ricinus communis]
          Length = 486

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 27/49 (55%), Positives = 39/49 (79%)
 Frame = -2

Query: 301 SPMKECNVPTNVNMGSSGALPYSSYRLLTKKKMKLYSVGPFVYRPTKPK 155
           SP++ C++PT+VN G +GA   SSYR+L+ KK+KL+SVGPF Y  ++PK
Sbjct: 433 SPLETCSIPTDVNKGITGA-HLSSYRILSDKKLKLFSVGPFFY-TSEPK 479


>ref|XP_002523124.1| conserved hypothetical protein [Ricinus communis]
           gi|223537686|gb|EEF39309.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 636

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 27/49 (55%), Positives = 38/49 (77%)
 Frame = -2

Query: 301 SPMKECNVPTNVNMGSSGALPYSSYRLLTKKKMKLYSVGPFVYRPTKPK 155
           SP+  C++PT+VN G +GA   SSYR+L+ KK+KL+SVGPF Y  ++PK
Sbjct: 583 SPLDTCDIPTDVNKGITGA-HLSSYRILSDKKLKLFSVGPFFY-TSEPK 629


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