BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029932
         (605 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containi...   155   4e-36
emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]   155   4e-36
ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arab...   148   6e-34
ref|XP_002332913.1| predicted protein [Populus trichocarpa] gi|2...   143   2e-32
gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]             140   2e-31

>ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  155 bits (393), Expect = 4e-36
 Identities = 79/122 (64%), Positives = 95/122 (77%), Gaps = 6/122 (4%)
 Frame = +2

Query: 251  FNQKGFSEITSFITGKALHAFC-VKNVALSQFHLNTLINFYSRFGCVESSRYLFDEMPQR 427
            F  KGFSEITS + GKALHAFC V +V L  F  NTLIN YS+FG +E +RY+FDEM  R
Sbjct: 749  FPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHR 808

Query: 428  SESSWSTMLSGYVRAGLYDEAVELFREMWGQGIEPNGFILASLLTACNRS-----EGMVL 592
            +E+SWSTMLSGYVR GLY+EAV LF +MWG G+EPNGF++ASL+TAC+RS     EG  +
Sbjct: 809  NEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQV 868

Query: 593  HG 598
            HG
Sbjct: 869  HG 870



 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
 Frame = +2

Query: 269 SEITSFITGKALHAFCVK-----NVALSQFHLNTLINFYSRFGCVESSRYLFDEMPQRSE 433
           + + SF  G  +HAF +K     +VA+     N LI+ Y++ G +E ++  FDEM +++ 
Sbjct: 345 ANLASFALGTQIHAFALKYQPSYDVAMG----NALIDMYAKSGEIEDAKRAFDEMEEKNV 400

Query: 434 SSWSTMLSGYVRAGLYDEAVELFREMWGQGIEPNGFILASLLTACNRSEGMVLHGSQ 604
            SW++++SGY + G    AV L+++M  +G +PN     SLL AC+ + G+   G +
Sbjct: 401 ISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHT-GLTAEGCE 456



 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
 Frame = +2

Query: 293 GKALHAFCVKNVALSQFHLNT-LINFYSRFGCVESSRYLFDEMPQRSESSWSTMLSGYVR 469
           G  +H   + N   S  HLNT LI FY + G V ++R +FD MP+RS  SW+ M+SGY +
Sbjct: 49  GHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQ 108

Query: 470 AGLYDEAVELFREMWGQGIEPNGFILASLLTAC 568
            G +++A  LF +M   G++ N F   S L AC
Sbjct: 109 NGRFEKAFVLFSDMRHCGVKANQFTYGSALRAC 141



 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
 Frame = +2

Query: 293  GKALHAFCVKNVALSQFHLNT-LINFYSRFGCVESSRYLFDEMPQRSESSWSTMLSGYVR 469
            G  +H F VK   L   ++ T L++FY   G V +++ LF+EMP  +  SW++++ GY  
Sbjct: 865  GFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSD 924

Query: 470  AGLYDEAVELFREMWGQGIEPNGFILASLLTACNRSEGMVL 592
            +G   E + +++ M  +G+  N    A++ ++C   E  VL
Sbjct: 925  SGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVL 965



 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 28/84 (33%), Positives = 48/84 (57%)
 Frame = +2

Query: 341 FHLNTLINFYSRFGCVESSRYLFDEMPQRSESSWSTMLSGYVRAGLYDEAVELFREMWGQ 520
           F  + L++F+S+ G +E + YLF  M +R   SW+ M+ GY   G  D++  +FR M   
Sbjct: 167 FVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRG 226

Query: 521 GIEPNGFILASLLTACNRSEGMVL 592
           G+ P+ + L S+L A     G+++
Sbjct: 227 GLVPDCYTLGSVLRASAEGGGLII 250



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
 Frame = +2

Query: 212  QILSDHRNIEISL--FNQKGFSEITSFIT----GKALHAFCVKNVALSQFHL-NTLINFY 370
            +I  + RN+ ++L  F+  G    T+ +     G+ LH   +K    S  H+ N  ++ Y
Sbjct: 1338 KIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMY 1397

Query: 371  SRFGCVESSRYLFDEMPQRSESSWSTMLSGYVRAGLYDEAVELFREMWGQGIEPNGFILA 550
             + G +     +  +   RS  SW+ ++S + R G + +A E F EM   G +P+     
Sbjct: 1398 GKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFV 1457

Query: 551  SLLTACNRSEGMVLHG 598
            SLL+ACN   G+V  G
Sbjct: 1458 SLLSACNHG-GLVDEG 1472


>emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  155 bits (393), Expect = 4e-36
 Identities = 79/122 (64%), Positives = 95/122 (77%), Gaps = 6/122 (4%)
 Frame = +2

Query: 251 FNQKGFSEITSFITGKALHAFC-VKNVALSQFHLNTLINFYSRFGCVESSRYLFDEMPQR 427
           F  KGFSEITS + GKALHAFC V +V L  F  NTLIN YS+FG +E +RY+FDEM  R
Sbjct: 99  FPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHR 158

Query: 428 SESSWSTMLSGYVRAGLYDEAVELFREMWGQGIEPNGFILASLLTACNRS-----EGMVL 592
           +E+SWSTMLSGYVR GLY+EAV LF +MWG G+EPNGF++ASL+TAC+RS     EG  +
Sbjct: 159 NEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQV 218

Query: 593 HG 598
           HG
Sbjct: 219 HG 220



 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
 Frame = +2

Query: 293 GKALHAFCVKNVALSQFHLNT-LINFYSRFGCVESSRYLFDEMPQRSESSWSTMLSGYVR 469
           G  +H F VK   L   ++ T L++FY   G V +++ LF+EMP  +  SW++++ GY  
Sbjct: 215 GFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSD 274

Query: 470 AGLYDEAVELFREMWGQGIEPNGFILASLLTACNRSEGMVL 592
           +G   E + +++ M  +G+  N    A++ ++C   E  VL
Sbjct: 275 SGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVL 315



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
 Frame = +2

Query: 212  QILSDHRNIEISL--FNQKGFSEITSFIT----GKALHAFCVKNVALSQFHL-NTLINFY 370
            +I  + RN+ ++L  F+  G    T+ +     G+ LH   +K    S  H+ N  ++ Y
Sbjct: 688  KIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMY 747

Query: 371  SRFGCVESSRYLFDEMPQRSESSWSTMLSGYVRAGLYDEAVELFREMWGQGIEPNGFILA 550
             + G +     +  +   RS  SW+ ++S + R G + +A E F EM   G +P+     
Sbjct: 748  GKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFV 807

Query: 551  SLLTACNRSEGMVLHG 598
            SLL+ACN   G+V  G
Sbjct: 808  SLLSACNHG-GLVDEG 822


>ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata] gi|297338751|gb|EFH69168.1| hypothetical protein
           ARALYDRAFT_889039 [Arabidopsis lyrata subsp. lyrata]
          Length = 1038

 Score =  148 bits (374), Expect = 6e-34
 Identities = 76/133 (57%), Positives = 98/133 (73%), Gaps = 6/133 (4%)
 Frame = +2

Query: 218 LSDHRNIEISLFNQKGFSEITSFITGKALHAFCVKN-VALSQFHLNTLINFYSRFGCVES 394
           LSDH N E+S F+Q GFS+IT   TG+ALHA CVK  V LS  H NTLIN Y++FG V+ 
Sbjct: 52  LSDHWNPELSCFDQTGFSQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKP 111

Query: 395 SRYLFDEMPQRSESSWSTMLSGYVRAGLYDEAVELFREMWGQGIEPNGFILASLLTACNR 574
           +RYLFD+MP R+E SW+TM+SG VR GLY E +E F++M   GI+P+ F++ASL+TAC R
Sbjct: 112 ARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGR 171

Query: 575 S-----EGMVLHG 598
           S     EG+ +HG
Sbjct: 172 SGSMFREGVQVHG 184



 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 30/96 (31%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
 Frame = +2

Query: 284 FITGKALHAFCVKNVALSQFHLNT-LINFYSRFGCVESSRYLFDEMPQRSESSWSTMLSG 460
           F  G  +H F  K+  LS  +++T +++ Y  +G V  SR +F+EMP R+  SW++++ G
Sbjct: 176 FREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVG 235

Query: 461 YVRAGLYDEAVELFREMWGQGIEPNGFILASLLTAC 568
           Y   G  +E +++++ M G+G+E N   ++ ++++C
Sbjct: 236 YSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSC 271



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 47/143 (32%), Positives = 65/143 (45%), Gaps = 11/143 (7%)
 Frame = +2

Query: 203  HGTQIL---SDHRNIEISLFNQKGFSEITSFIT-------GKALHAFCVK-NVALSQFHL 349
            HG ++L   S  R+  +SL +Q  FSE  S          G+ LH   VK    L  F  
Sbjct: 646  HGEEVLKLVSKMRSFGLSL-DQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIF 704

Query: 350  NTLINFYSRFGCVESSRYLFDEMPQRSESSWSTMLSGYVRAGLYDEAVELFREMWGQGIE 529
            N   + YS+ G +     +      RS  SW+ ++S   R G ++E  E F EM   GI+
Sbjct: 705  NAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIK 764

Query: 530  PNGFILASLLTACNRSEGMVLHG 598
            P      SLLTAC+   G+V  G
Sbjct: 765  PGHVTFVSLLTACSHG-GLVDQG 786


>ref|XP_002332913.1| predicted protein [Populus trichocarpa] gi|222873730|gb|EEF10861.1|
           predicted protein [Populus trichocarpa]
          Length = 253

 Score =  143 bits (361), Expect = 2e-32
 Identities = 73/136 (53%), Positives = 100/136 (73%), Gaps = 2/136 (1%)
 Frame = +2

Query: 203 HGTQI-LSDHRNIEISLFNQKGFSEITSFITGKALHAFCVKN-VALSQFHLNTLINFYSR 376
           +GT + L +H N EIS F QKGFS+IT  +TGKALHA  +K  V L+ F+ NTLIN YS+
Sbjct: 7   YGTCVSLLNHPNPEISCFYQKGFSQITKEVTGKALHALFIKGLVNLTVFYSNTLINMYSK 66

Query: 377 FGCVESSRYLFDEMPQRSESSWSTMLSGYVRAGLYDEAVELFREMWGQGIEPNGFILASL 556
           FG +  SRYLFD+M +R+++SW+ M+SG+VRAG Y E++  F EM   G++P+G  +ASL
Sbjct: 67  FGHIGFSRYLFDKMSERNDASWNNMMSGFVRAGFYRESMRFFNEMRDFGVKPSGIAVASL 126

Query: 557 LTACNRSEGMVLHGSQ 604
           +TAC RSE M++ G Q
Sbjct: 127 VTACERSEWMLIEGVQ 142


>gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  140 bits (352), Expect = 2e-31
 Identities = 73/131 (55%), Positives = 95/131 (72%), Gaps = 6/131 (4%)
 Frame = +2

Query: 224 DHRNIEISLFNQKGFSEITSFITGKALHAFCVKN-VALSQFHLNTLINFYSRFGCVESSR 400
           +H N EIS F+Q GFS+IT   TG+A+HA CVK  V LS  H NTLIN Y++FG V+ +R
Sbjct: 68  NHWNPEISCFDQIGFSQITIETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPAR 127

Query: 401 YLFDEMPQRSESSWSTMLSGYVRAGLYDEAVELFREMWGQGIEPNGFILASLLTACNRS- 577
           +LFD MP R+E SW+TM+SG VR GLY E +E FR+M   GI+P+ F++ASL+TAC RS 
Sbjct: 128 HLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSG 187

Query: 578 ----EGMVLHG 598
               EG+ +HG
Sbjct: 188 SMFREGVQVHG 198