BLASTX nr result
ID: Coptis25_contig00029925
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00029925
(1114 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004146647.1| PREDICTED: mediator of RNA polymerase II tra... 247 e-112
ref|XP_004170159.1| PREDICTED: mediator of RNA polymerase II tra... 247 e-112
ref|XP_002519035.1| conserved hypothetical protein [Ricinus comm... 243 e-112
ref|XP_003543060.1| PREDICTED: uncharacterized protein LOC100812... 241 e-107
ref|XP_003541539.1| PREDICTED: uncharacterized protein LOC100793... 241 e-106
>ref|XP_004146647.1| PREDICTED: mediator of RNA polymerase II transcription subunit
16-like [Cucumis sativus]
Length = 1220
Score = 247 bits (630), Expect(2) = e-112
Identities = 124/194 (63%), Positives = 147/194 (75%), Gaps = 8/194 (4%)
Frame = +3
Query: 6 PMQTVWVTRVDRSIQPMNEWECSQEAASVSVSFDNPNTPL-------VGKAKRLSFYPLD 164
P QTVW+++VD SI P ++++ +Q A S PN+ L + KAK++ F P D
Sbjct: 461 PTQTVWLSKVDTSISPTSDFKSNQSAVS------GPNSDLRKLSGAYIDKAKKVCFDPFD 514
Query: 165 LPSDVRTLARIVYSQQG-EVAVSFLNGGVHIFSGASFAPVGNYHGNVVSAIAAPTFSSSG 341
LPSDVRTLARIVYS G E+AV+FL GGVHIFSG +FAPV NY NV AIAAP FSS+
Sbjct: 515 LPSDVRTLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTS 574
Query: 342 CCLASVWHDTSKDCTSLKITRVLPPALPNSEFKANSATWERAIADRFWWSLLVGVDWWDA 521
CC ASVWHD +KDCT L+I RVLPPA P+++ KANS+TWERAIA+RFWWSLLVGVDWWDA
Sbjct: 575 CCSASVWHDVNKDCTMLRIIRVLPPAAPSNQLKANSSTWERAIAERFWWSLLVGVDWWDA 634
Query: 522 VGCTLSAVEDGIES 563
VGCT SA EDGI S
Sbjct: 635 VGCTQSAAEDGIVS 648
Score = 185 bits (470), Expect(2) = e-112
Identities = 113/194 (58%), Positives = 125/194 (64%), Gaps = 9/194 (4%)
Frame = +1
Query: 559 SLDRIKCRLLEGRSAQEVRAXXXXXXXXXXXXXXGKGIESALINPGTLVSEPWLASGEML 738
SLDRIKCRLLEG +AQEVRA GKGIESALINP L+SEPW ASGE L
Sbjct: 675 SLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALLSEPWHASGETL 734
Query: 739 SGIDADVMTIEPQLFSSIQAYSDVVVDLASHFTICLRR---FCRTLASPA--AGTGSERN 903
SGID + M +EP L SIQAY D V+DLASHF LRR FCRTLAS A AGTGS RN
Sbjct: 735 SGIDPEAMAVEPALIPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRN 794
Query: 904 XXXXXXXXXXXXXXXXG---AHSGSTSLNESSQVSACLQGAIAKITSTTDGVSSLASNPM 1074
G A S +TS S+Q+ A +QGAIAKI+STTDGV+S NP+
Sbjct: 795 IVASPTPSSASPATSQGEFSAQSSTTSTTGSTQMQAWVQGAIAKISSTTDGVTSSTPNPI 854
Query: 1075 S-PSTFTPISINTG 1113
S STF PISINTG
Sbjct: 855 SGSSTFMPISINTG 868
>ref|XP_004170159.1| PREDICTED: mediator of RNA polymerase II transcription subunit
16-like [Cucumis sativus]
Length = 1143
Score = 247 bits (630), Expect(2) = e-112
Identities = 124/194 (63%), Positives = 147/194 (75%), Gaps = 8/194 (4%)
Frame = +3
Query: 6 PMQTVWVTRVDRSIQPMNEWECSQEAASVSVSFDNPNTPL-------VGKAKRLSFYPLD 164
P QTVW+++VD SI P ++++ +Q A S PN+ L + KAK++ F P D
Sbjct: 384 PTQTVWLSKVDTSISPTSDFKSNQSAVS------GPNSDLRKLSGAYIDKAKKVCFDPFD 437
Query: 165 LPSDVRTLARIVYSQQG-EVAVSFLNGGVHIFSGASFAPVGNYHGNVVSAIAAPTFSSSG 341
LPSDVRTLARIVYS G E+AV+FL GGVHIFSG +FAPV NY NV AIAAP FSS+
Sbjct: 438 LPSDVRTLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTS 497
Query: 342 CCLASVWHDTSKDCTSLKITRVLPPALPNSEFKANSATWERAIADRFWWSLLVGVDWWDA 521
CC ASVWHD +KDCT L+I RVLPPA P+++ KANS+TWERAIA+RFWWSLLVGVDWWDA
Sbjct: 498 CCSASVWHDVNKDCTMLRIIRVLPPAAPSNQLKANSSTWERAIAERFWWSLLVGVDWWDA 557
Query: 522 VGCTLSAVEDGIES 563
VGCT SA EDGI S
Sbjct: 558 VGCTQSAAEDGIVS 571
Score = 185 bits (470), Expect(2) = e-112
Identities = 113/194 (58%), Positives = 125/194 (64%), Gaps = 9/194 (4%)
Frame = +1
Query: 559 SLDRIKCRLLEGRSAQEVRAXXXXXXXXXXXXXXGKGIESALINPGTLVSEPWLASGEML 738
SLDRIKCRLLEG +AQEVRA GKGIESALINP L+SEPW ASGE L
Sbjct: 598 SLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALLSEPWHASGETL 657
Query: 739 SGIDADVMTIEPQLFSSIQAYSDVVVDLASHFTICLRR---FCRTLASPA--AGTGSERN 903
SGID + M +EP L SIQAY D V+DLASHF LRR FCRTLAS A AGTGS RN
Sbjct: 658 SGIDPEAMAVEPALIPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRN 717
Query: 904 XXXXXXXXXXXXXXXXG---AHSGSTSLNESSQVSACLQGAIAKITSTTDGVSSLASNPM 1074
G A S +TS S+Q+ A +QGAIAKI+STTDGV+S NP+
Sbjct: 718 IVASPTPSSASPATSQGEFSAQSSTTSTTGSTQMQAWVQGAIAKISSTTDGVTSSTPNPI 777
Query: 1075 S-PSTFTPISINTG 1113
S STF PISINTG
Sbjct: 778 SGSSTFMPISINTG 791
>ref|XP_002519035.1| conserved hypothetical protein [Ricinus communis]
gi|223541698|gb|EEF43246.1| conserved hypothetical
protein [Ricinus communis]
Length = 1255
Score = 243 bits (621), Expect(2) = e-112
Identities = 124/188 (65%), Positives = 145/188 (77%), Gaps = 2/188 (1%)
Frame = +3
Query: 6 PMQTVWVTRVDRSIQPMNEWECSQE-AASVSVSFDNPNTPLVGKAKRLSFYPLDLPSDVR 182
PMQTVWV++VD SI P N+++ Q +A + + V KAK L+F P DLPSDVR
Sbjct: 499 PMQTVWVSKVDTSIPPTNDFKNHQTVSAGPAPDARKASDSGVEKAKSLTFDPFDLPSDVR 558
Query: 183 TLARIVYSQQG-EVAVSFLNGGVHIFSGASFAPVGNYHGNVVSAIAAPTFSSSGCCLASV 359
+LARIVYS G E+A++FL GGVHIFSG +F PV +Y NV SAIAAP FSS+ CC ASV
Sbjct: 559 SLARIVYSAHGGEIAIAFLRGGVHIFSGPNFTPVDSYQINVGSAIAAPAFSSTSCCSASV 618
Query: 360 WHDTSKDCTSLKITRVLPPALPNSEFKANSATWERAIADRFWWSLLVGVDWWDAVGCTLS 539
WHDTSKD T LKI RVLPPA+P+S+ KANS+TWERAIA+RFWWSLLVGVDWWDAVGCT S
Sbjct: 619 WHDTSKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQS 678
Query: 540 AVEDGIES 563
A ED I S
Sbjct: 679 AAEDNIVS 686
Score = 187 bits (476), Expect(2) = e-112
Identities = 110/191 (57%), Positives = 124/191 (64%), Gaps = 6/191 (3%)
Frame = +1
Query: 559 SLDRIKCRLLEGRSAQEVRAXXXXXXXXXXXXXXGKGIESALINPGTLVSEPWLASGEML 738
SLDRIKCRLLEG +AQEVRA GKGIESALINP LV EPW ASGE L
Sbjct: 713 SLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETL 772
Query: 739 SGIDADVMTIEPQLFSSIQAYSDVVVDLASHFTICLRR---FCRTLASPA--AGTGSERN 903
SGID + M +EP L SIQAY D V+DLASHF LRR FCRTLAS A AGTGS R+
Sbjct: 773 SGIDPEAMAVEPSLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRS 832
Query: 904 XXXXXXXXXXXXXXXXGAHSGSTSLNESSQVSACLQGAIAKITSTTDGVSSLASNPMS-P 1080
G +G+TS S+Q+ A +QGAIAKI+ST DGVS+ NP+S P
Sbjct: 833 MVTSPTQSAASPATSQGGQNGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNATPNPISGP 892
Query: 1081 STFTPISINTG 1113
S+F PISINTG
Sbjct: 893 SSFMPISINTG 903
>ref|XP_003543060.1| PREDICTED: uncharacterized protein LOC100812938 [Glycine max]
Length = 1189
Score = 241 bits (614), Expect(2) = e-107
Identities = 122/189 (64%), Positives = 145/189 (76%), Gaps = 3/189 (1%)
Frame = +3
Query: 6 PMQTVWVTRVDRSIQPMNEWECSQEAASVSVSFDNPNTPLVG--KAKRLSFYPLDLPSDV 179
PMQTVW T+VD SI P N+++ + +A +V ++ D G K+KR++F P DLPSDV
Sbjct: 435 PMQTVWQTKVDLSIPPTNDFK-NHQAPAVGMNTDIQKVSEFGFDKSKRVNFDPFDLPSDV 493
Query: 180 RTLARIVYSQQG-EVAVSFLNGGVHIFSGASFAPVGNYHGNVVSAIAAPTFSSSGCCLAS 356
R LARIVYS G E+A++FL GGVHIFSG +FAPV NY +V SAIAAP FSS+ CC AS
Sbjct: 494 RALARIVYSPHGGEIAIAFLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSAS 553
Query: 357 VWHDTSKDCTSLKITRVLPPALPNSEFKANSATWERAIADRFWWSLLVGVDWWDAVGCTL 536
VWHD SKD T LKI RVLPPA+P S+ K NS+ WERAIA+RFWWSLLVGV+WWDAVGCT
Sbjct: 554 VWHDPSKDQTILKIIRVLPPAIPTSQVKTNSSNWERAIAERFWWSLLVGVNWWDAVGCTQ 613
Query: 537 SAVEDGIES 563
SA EDGI S
Sbjct: 614 SAAEDGIVS 622
Score = 174 bits (440), Expect(2) = e-107
Identities = 102/192 (53%), Positives = 120/192 (62%), Gaps = 7/192 (3%)
Frame = +1
Query: 559 SLDRIKCRLLEGRSAQEVRAXXXXXXXXXXXXXXGKGIESALINPGTLVSEPWLASGEML 738
SLDRIKCRLLEG +AQEVRA GKGIESALINP LV +PW S E L
Sbjct: 649 SLDRIKCRLLEGANAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQVSSETL 708
Query: 739 SGIDADVMTIEPQLFSSIQAYSDVVVDLASHFTICLRR---FCRTLASPA--AGTGSERN 903
+ ID + + +EP L +QAY D V+DLASHF LRR FCRTLAS A AGTG+ RN
Sbjct: 709 TSIDPEAVAVEPALVPCVQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGTGNNRN 768
Query: 904 XXXXXXXXXXXXXXXXGAHSGSTSLNESSQVSACLQGAIAKITSTTDGVSSLASNP--MS 1077
G +G+TS + S+Q+ A +QGAIAKI+STTDGVS+ NP
Sbjct: 769 VVASPAQCSATPATSQGGQNGTTSSSGSTQMQAWVQGAIAKISSTTDGVSNPVPNPPISG 828
Query: 1078 PSTFTPISINTG 1113
PS+F PISINTG
Sbjct: 829 PSSFMPISINTG 840
>ref|XP_003541539.1| PREDICTED: uncharacterized protein LOC100793949 [Glycine max]
Length = 1244
Score = 241 bits (616), Expect(2) = e-106
Identities = 118/188 (62%), Positives = 144/188 (76%), Gaps = 2/188 (1%)
Frame = +3
Query: 6 PMQTVWVTRVDRSIQPMNEWECSQEAA-SVSVSFDNPNTPLVGKAKRLSFYPLDLPSDVR 182
PMQTVW ++VD SI P N+++ Q A +S + + K+KR++F P DLPSDVR
Sbjct: 499 PMQTVWQSKVDLSIPPTNDFKNHQSPAIGMSSDVQKVSESVSDKSKRVNFDPFDLPSDVR 558
Query: 183 TLARIVYSQQG-EVAVSFLNGGVHIFSGASFAPVGNYHGNVVSAIAAPTFSSSGCCLASV 359
LAR+VYS G E+A++FL GGVH+FSG +F PV NY NV SAIAAP FSS+ CC ASV
Sbjct: 559 ALARVVYSAHGGEIAIAFLRGGVHVFSGPNFTPVDNYQINVGSAIAAPAFSSTSCCSASV 618
Query: 360 WHDTSKDCTSLKITRVLPPALPNSEFKANSATWERAIADRFWWSLLVGVDWWDAVGCTLS 539
WHD+SK+CT L+I RVLPP++P S+ KANS+TWERAIA+RFWWSLLV VDWWDAVGCT S
Sbjct: 619 WHDSSKNCTILRIIRVLPPSIPISQAKANSSTWERAIAERFWWSLLVSVDWWDAVGCTQS 678
Query: 540 AVEDGIES 563
A EDGI S
Sbjct: 679 AAEDGIVS 686
Score = 172 bits (436), Expect(2) = e-106
Identities = 105/191 (54%), Positives = 120/191 (62%), Gaps = 6/191 (3%)
Frame = +1
Query: 559 SLDRIKCRLLEGRSAQEVRAXXXXXXXXXXXXXXGKGIESALINPGTLVSEPWLASGEML 738
SLDRIKCRLLEG +AQEVRA GKGIESALIN LV E W ASGE L
Sbjct: 713 SLDRIKCRLLEGSNAQEVRAMVLDMQARLLLDMLGKGIESALINSSALVPELWQASGETL 772
Query: 739 SGIDADVMTIEPQLFSSIQAYSDVVVDLASHFTICLRR---FCRTLASPA--AGTGSERN 903
S ID + M +EP L SIQAY D V+DLASHF LRR FCRTLAS A AG+GS RN
Sbjct: 773 SSIDPESMAVEPALIPSIQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGSGSNRN 832
Query: 904 XXXXXXXXXXXXXXXXGAHSGSTSLNESSQVSACLQGAIAKITSTTDGVSSLASNPMS-P 1080
G +G++S S+Q+ +QGAIAKI++TTDG S+ NP+S P
Sbjct: 833 MVASPTQSSATPATSQGGQNGTSSSMGSAQLQTWVQGAIAKISNTTDGGSNPTPNPISGP 892
Query: 1081 STFTPISINTG 1113
STF PISINTG
Sbjct: 893 STFMPISINTG 903