BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029849
         (505 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]    77   1e-12
ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis ...    73   3e-11
ref|XP_002305539.1| f-box family protein [Populus trichocarpa] g...    65   4e-09
ref|XP_003591727.1| F-box protein [Medicago truncatula] gi|35834...    65   6e-09
ref|XP_002313690.1| f-box family protein [Populus trichocarpa] g...    65   7e-09

>emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]
          Length = 986

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 13/150 (8%)
 Frame = -3

Query: 431 MSTARRDWSELPRDILTKIAEDCIETHLQTIQFRAVCNSWRSSV----PLPTPSLASPVV 264
           M +    WS LP+D+L KIA   ++T +  ++FR VC+SW SSV    P   P L+  + 
Sbjct: 391 MESDXGQWSHLPKDLLAKIAGR-LDTXIDFLRFRGVCSSWMSSVSPTFPSKNPLLSLKIP 449

Query: 263 LPLTQLLNYKTGFCE---------LLENTIYTIRPKQLQPESCSKLLLVQVDVHAKPRNV 111
            P+  + N      +         L+E+T+Y ++P +  P+S   LL+   +   KP  V
Sbjct: 450 YPIDSIANLNISDPDTPNPRVSFSLIESTLYYLQPLRQTPDSKEALLVKLXE--PKPGKV 507

Query: 110 INIIDPLSNIVIKPIPRQFPRGLNLLDYKI 21
             ++D LS   IK +P+ FP+ LN LD+++
Sbjct: 508 -RLMDTLSRRAIKHLPKNFPKVLNTLDFRV 536



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 13/143 (9%)
 Frame = -3

Query: 410 WSELPRDILTKIAEDCIETHLQTIQFRAVCNSWRSSV----PLPTPSLASPVVLPLTQLL 243
           WS LP+D+L KIA   ++T +  + FR VC+SW SSV    P   P L+  +  P+    
Sbjct: 8   WSHLPKDLLAKIAGR-LDTRIDFLHFRGVCSSWMSSVSPTFPSKNPLLSLKLPYPIASNA 66

Query: 242 NYK---------TGFCELLENTIYTIRPKQLQPESCSKLLLVQVDVHAKPRNVINIIDPL 90
           N            G   L+E+T+Y ++P +  P+S  + LLV+++   KP     ++D L
Sbjct: 67  NLNIXDPDTRNPRGSFSLIESTLYYLQPLRQTPDS-KEALLVKLE-EPKPGKG-RLMDTL 123

Query: 89  SNIVIKPIPRQFPRGLNLLDYKI 21
           S   I+ +P+ FP+ LN L++++
Sbjct: 124 SRCAIQHLPKNFPKVLNTLNFRV 146


>ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 405

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 13/150 (8%)
 Frame = -3

Query: 431 MSTARRDWSELPRDILTKIAEDCIETHLQTIQFRAVCNSWRSSV----PLPTPSLASPVV 264
           M +    WS LP+D+L KIA   ++T +  + FR VC+SW SSV    P   P L+  + 
Sbjct: 1   MDSDAGQWSHLPKDLLAKIAGR-LDTRIDFLHFRGVCSSWMSSVSPTFPRKNPILSLKLP 59

Query: 263 LPLTQLLNYKT---------GFCELLENTIYTIRPKQLQPESCSKLLLVQVDVHAKPRNV 111
            P+    N            G   L+E+T+Y ++P +  P+S  + LLV+++   KP   
Sbjct: 60  YPIASNANLNICDPDTRNPHGSFSLIESTLYYLQPLRQTPDS-KEALLVKLE-EPKPGKG 117

Query: 110 INIIDPLSNIVIKPIPRQFPRGLNLLDYKI 21
             ++D LS   I+ +P+ FP+ LN L++++
Sbjct: 118 -RLMDTLSRCAIQHLPKNFPKVLNTLNFRV 146


>ref|XP_002305539.1| f-box family protein [Populus trichocarpa]
           gi|222848503|gb|EEE86050.1| f-box family protein
           [Populus trichocarpa]
          Length = 469

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
 Frame = -3

Query: 413 DWSELPRDILTKIAEDCIETHLQTIQFRAVCNSWRSSVPLPTPSLASPV--VLPLTQLLN 240
           +W+ LP+D++  I++  ++T    ++FR+VCNSWRSS+P   P L+S    +LP   + +
Sbjct: 3   EWTHLPKDLMELISKR-LDTSTDLLRFRSVCNSWRSSIPPEPPCLSSNTFKILPNDGISH 61

Query: 239 YKTGFCELLENTIYTI--RPKQLQPESCSKLLLVQVDVHAKPRNVINIIDPLSNIVIKPI 66
              GF  L + T++ +       Q ++   L+ ++ DV  K     ++ DPLS      +
Sbjct: 62  TSFGF-SLFKRTVFLVGLPNSHNQTDTQGWLIKIEEDVPGKK----HLFDPLSRCRSTSL 116

Query: 65  PRQFPRGLNLLDYKI 21
           P   PR L+L++ +I
Sbjct: 117 PNNLPRVLDLMNLRI 131


>ref|XP_003591727.1| F-box protein [Medicago truncatula]
           gi|358344561|ref|XP_003636357.1| F-box protein [Medicago
           truncatula] gi|355480775|gb|AES61978.1| F-box protein
           [Medicago truncatula] gi|355502292|gb|AES83495.1| F-box
           protein [Medicago truncatula]
          Length = 404

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 44/140 (31%), Positives = 77/140 (55%), Gaps = 8/140 (5%)
 Frame = -3

Query: 413 DWSELPRDILTKIAEDCIETHLQTIQFRAVCNSWRSSVPLPTPSLASPVVLP------LT 252
           +WSELP+D+L  I++  I++ L  I+FR+VC++WRSS  +P     S +  P      L+
Sbjct: 4   NWSELPKDLLNLISKH-IDSELDLIRFRSVCSNWRSS-SIPNHHPNSTIEFPLFKAPFLS 61

Query: 251 QLLNYKTGFCELLENTIYTIRPK-QLQPESCSKLLLVQVDVHAKPRNVINIIDP-LSNIV 78
             +N  T FC+L +++ + I+P  + Q ++  +  LV++   +  +N   +I P LS+  
Sbjct: 62  DSINNITSFCKLPKHSFFLIKPPLEQQQQTLVQPWLVRITQTSSGKN--KLIHPFLSHQY 119

Query: 77  IKPIPRQFPRGLNLLDYKIC 18
             P P  FP  L+     +C
Sbjct: 120 QSPYPFHFPHALDFSKLSVC 139


>ref|XP_002313690.1| f-box family protein [Populus trichocarpa]
           gi|222850098|gb|EEE87645.1| f-box family protein
           [Populus trichocarpa]
          Length = 410

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 42/135 (31%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
 Frame = -3

Query: 413 DWSELPRDILTKIAEDCIETHLQTIQFRAVCNSWRSSVPLPTPSLASPV--VLPLTQLLN 240
           +W+ LP+D++  I++ C++T    ++FR+VCNSWRSS+P  +P L+S    +LP   + +
Sbjct: 3   EWTHLPKDLIELISK-CLDTSTDLLRFRSVCNSWRSSIPPKSPRLSSNTFKILPNDGISH 61

Query: 239 YKTGFCELLENTIYTI--RPKQLQPESCSKLLLVQVDVHAKPRNVINIIDPLSNIVIKPI 66
              GF  L + +I+ I       Q +    L+ ++ DV  K     ++ DPLS      +
Sbjct: 62  TSFGF-SLFKRSIFLIGLPNSHNQTDLQGWLVKIEEDVPGKK----HLFDPLSRCRSTSL 116

Query: 65  PRQFPRGLNLLDYKI 21
               PR L+L++ +I
Sbjct: 117 HHSLPRVLDLMNLRI 131