BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029838
         (638 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADB27476.1| gag-pol polyprotein [Bouteloua hirsuta subsp. pec...    77   4e-12
gb|AAU90169.1| putative polyprotein [Oryza sativa Japonica Group]      76   6e-12
gb|AAD17351.1| contains similarity to retrovirus-related polypro...    75   8e-12
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]               75   1e-11
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...    75   1e-11

>gb|ADB27476.1| gag-pol polyprotein [Bouteloua hirsuta subsp. pectinata]
          Length = 227

 Score = 76.6 bits (187), Expect = 4e-12
 Identities = 53/134 (39%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
 Frame = +1

Query: 4   HTPCLLFPFQINTSVFILTVVAWLDVSMDFVV*ILPTNERLTSISIVVDMFSKTAPFVPC 183
           + P L  P  + T+        WLD+SMDFV+ +  T +   SI +VVD FSK A F+PC
Sbjct: 65  NNPGLYMPLPVPTT-------PWLDISMDFVLGLPRTKKGRDSIFVVVDRFSKIAHFIPC 117

Query: 184 KKTSDASQIAHLYF-QVLRGYLIASYPIESPLNDVKFTSYFLKDLW---GTSREHSPT-S 348
            KT DAS +A L+F +++R + I    +     D KF S+F + LW   GT    S T  
Sbjct: 118 HKTDDASNVAELFFREIIRLHGIPHTIVTD--RDAKFLSHFWRSLWNKLGTKLLLSTTCH 175

Query: 349 LKIDIHTDVVNRRL 390
            + D  T+VVNR L
Sbjct: 176 PQTDGQTEVVNRTL 189


>gb|AAU90169.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1154

 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 50/123 (40%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
 Frame = +1

Query: 70   WLDVSMDFVV*ILPTNERLTSISIVVDMFSKTAPFVPCKKTSDASQIAHLYF-QVLRGYL 246
            W D+SMDFV+ +  T     SI + VD FSK A F+PC K+ DAS +A L+F +V+R + 
Sbjct: 866  WEDISMDFVLGLPRTRRGRDSIFVAVDRFSKMAHFIPCNKSDDASHVADLFFREVVRLHG 925

Query: 247  IASYPIESPLNDVKFTSYFLKDLW---GTSREHSPT-SLKIDIHTDVVNRRLEFSILFSL 414
            +    +     DVKF SYF K LW   GT    S T   +ID   +VVNR L   +   +
Sbjct: 926  VPRTIVSD--RDVKFMSYFWKTLWAKLGTKLLFSTTCHSQIDGQMEVVNRTLSMLLRMMI 983

Query: 415  MPN 423
              N
Sbjct: 984  KKN 986


>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
            zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
            E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
            putative polyprotein [Arabidopsis thaliana]
          Length = 1138

 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 51/112 (45%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
 Frame = +1

Query: 70   WLDVSMDFVV*ILPTNERLTSISIVVDMFSKTAPFVPCKKTSDASQIAHLYF-QVLRGYL 246
            W D+SMDFVV +  T     SI +VVD FSK A F+PC KT DA  IA+L+F +V+R + 
Sbjct: 830  WNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHIANLFFREVVRLHG 889

Query: 247  IASYPIESPLNDVKFTSYFLKDLW---GTSREHSPT-SLKIDIHTDVVNRRL 390
            +    +     D KF SYF K LW   GT    S T   + D  T+VVNR L
Sbjct: 890  MPKTIVSD--RDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTL 939


>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 51/112 (45%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
 Frame = +1

Query: 70   WLDVSMDFVV*ILPTNERLTSISIVVDMFSKTAPFVPCKKTSDASQIAHLYF-QVLRGYL 246
            W D+SMDFVV +  T     SI +VVD FSK A F+PC KT DA  IA+L+F +V+R + 
Sbjct: 1455 WNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAIHIANLFFREVVRLHG 1514

Query: 247  IASYPIESPLNDVKFTSYFLKDLW---GTSREHSPT-SLKIDIHTDVVNRRL 390
            +    +     D KF SYF K LW   GT    S T   + D  T+VVNR L
Sbjct: 1515 MPKTIVSD--RDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTL 1564


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 51/125 (40%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
 Frame = +1

Query: 64   VAWLDVSMDFVV*ILPTNERLTSISIVVDMFSKTAPFVPCKKTSDASQIAHLYF-QVLRG 240
            V W D+SMDFV+ +  T     SI +VVD FSK A F+PC KT DAS IA L+F +++R 
Sbjct: 1262 VPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIADLFFREIVRL 1321

Query: 241  YLIASYPIESPLNDVKFTSYFLKDLW---GTSREHSPT-SLKIDIHTDVVNRRLEFSILF 408
            + + +  +     D KF S+F + LW   GT    S T   + D  T+VVNR L   +  
Sbjct: 1322 HGVPNTIVSD--RDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRA 1379

Query: 409  SLMPN 423
             L  N
Sbjct: 1380 VLKKN 1384