BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029768
         (545 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|2...   145   4e-33
ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containi...   134   9e-30
ref|XP_002515124.1| pentatricopeptide repeat-containing protein,...   132   3e-29
ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containi...   129   2e-28
ref|XP_002874971.1| pentatricopeptide repeat-containing protein ...   122   3e-26

>ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|222872045|gb|EEF09176.1|
           predicted protein [Populus trichocarpa]
          Length = 513

 Score =  145 bits (366), Expect = 4e-33
 Identities = 68/118 (57%), Positives = 95/118 (80%)
 Frame = -2

Query: 355 IASVSKSLIETGTRNLNADTVPLSQSLVLDILRRNSIPTLRKIDFFKWASLRHNYKHSVD 176
           +A ++K+L E+GTR+L+ D++PLS+SLVL ILRRNS+ + +K++FFKW S+RH YKHSV 
Sbjct: 7   VAYLTKTLSESGTRSLDPDSIPLSESLVLQILRRNSLDSSKKMEFFKWCSVRHIYKHSVS 66

Query: 175 TYGEIFLSVCRAGCFNEIRPLIELMKGDGLVVDSVTFKVLLDAFIRLGKFDLAIEILD 2
           TY ++F ++CR+G   E+  L+  MK DG+VV S TFK+LLDAFIR GKFD A++ILD
Sbjct: 67  TYSQMFSTLCRSGYLEEVPDLLNSMKNDGVVVGSETFKLLLDAFIRSGKFDSALDILD 124


>ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
           [Vitis vinifera]
          Length = 792

 Score =  134 bits (337), Expect = 9e-30
 Identities = 66/120 (55%), Positives = 88/120 (73%), Gaps = 2/120 (1%)
 Frame = -2

Query: 355 IASVSKSLIETGTRNLNADTVPLSQSLVLDILRRNSIPTLRKIDFFKWASLRHNYKHSVD 176
           +AS+SK+L E GTR+ + +++P+S+SLV+ IL RNSI   RK++FF+W S RHNYKHSV 
Sbjct: 25  VASISKTLSERGTRSPDLESIPISESLVVQILGRNSIDVFRKVEFFRWCSFRHNYKHSVG 84

Query: 175 TYGEIFLSVCRAGC--FNEIRPLIELMKGDGLVVDSVTFKVLLDAFIRLGKFDLAIEILD 2
            Y  IF  VCRAG    +++  L+  MK DG+VV   TFK+LLD+ IR GKFD A+EILD
Sbjct: 85  AYSHIFRIVCRAGAEFLDQVPLLMSSMKDDGVVVGQETFKLLLDSLIRAGKFDSALEILD 144


>ref|XP_002515124.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545604|gb|EEF47108.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 898

 Score =  132 bits (333), Expect = 3e-29
 Identities = 62/118 (52%), Positives = 83/118 (70%)
 Frame = -2

Query: 355 IASVSKSLIETGTRNLNADTVPLSQSLVLDILRRNSIPTLRKIDFFKWASLRHNYKHSVD 176
           +A ++K+L E+G RNL+ D +PLS+ L+L ILR+NS+   +KI+FFKW S  HNYKHS  
Sbjct: 55  VAFLNKALSESGVRNLDPDFIPLSEPLILQILRQNSLDASKKIEFFKWCSFSHNYKHSAC 114

Query: 175 TYGEIFLSVCRAGCFNEIRPLIELMKGDGLVVDSVTFKVLLDAFIRLGKFDLAIEILD 2
            Y  +F +VC AG F E+R L+  MK D  +V + TFK LLD FI LG FD A+E+LD
Sbjct: 115 VYSHMFRTVCNAGYFEEVRSLLNSMKDDCAIVGTGTFKFLLDTFINLGNFDFALELLD 172


>ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Cucumis sativus]
           gi|449523383|ref|XP_004168703.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g01570-like [Cucumis sativus]
          Length = 803

 Score =  129 bits (325), Expect = 2e-28
 Identities = 63/118 (53%), Positives = 85/118 (72%)
 Frame = -2

Query: 355 IASVSKSLIETGTRNLNADTVPLSQSLVLDILRRNSIPTLRKIDFFKWASLRHNYKHSVD 176
           +AS++K+L E+GTR L   ++P+S  L+L IL   S+    K+DFFKW SL  N+ HS  
Sbjct: 32  LASITKTLSESGTRTLQHHSLPISHPLLLQILHSRSLNPSHKLDFFKWCSLAPNFNHSPS 91

Query: 175 TYGEIFLSVCRAGCFNEIRPLIELMKGDGLVVDSVTFKVLLDAFIRLGKFDLAIEILD 2
           TY +IF  +CR+G  +E+ PL++ MK DG+ VDS TFKVLLDAFIR GK+D A+EILD
Sbjct: 92  TYSQIFHILCRSGYLHEVPPLLDSMKRDGVSVDSHTFKVLLDAFIRSGKYDAALEILD 149


>ref|XP_002874971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297320808|gb|EFH51230.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 802

 Score =  122 bits (307), Expect = 3e-26
 Identities = 60/119 (50%), Positives = 86/119 (72%), Gaps = 1/119 (0%)
 Frame = -2

Query: 355 IASVSKSLIETGTRNLNADTVPLSQSLVLDILRRNSIPTLRKIDFFKWA-SLRHNYKHSV 179
           +AS+SK+L ++GTR L+A+++P+S+ +VL ILRRNSI   +K+DFF+W  SLR  YKHSV
Sbjct: 33  VASLSKTLSQSGTRGLDANSIPISEPVVLQILRRNSIDPSKKLDFFRWCYSLRTGYKHSV 92

Query: 178 DTYGEIFLSVCRAGCFNEIRPLIELMKGDGLVVDSVTFKVLLDAFIRLGKFDLAIEILD 2
             Y +IF +VCR G   E+  L+  MK DG+ +D    K+LLD+ IR GKF+ A+ +LD
Sbjct: 93  SAYSQIFRTVCRTGLLGEVPDLLCSMKEDGVNLDQTMAKILLDSLIRSGKFESALGVLD 151