BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029762
         (537 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE59647.1| hypothetical protein OsJ_12023 [Oryza sativa Japo...    56   3e-06
gb|EEC75888.1| hypothetical protein OsI_12930 [Oryza sativa Indi...    56   3e-06
gb|AAU89136.1| F-box domain containing protein [Oryza sativa Jap...    56   3e-06
gb|AAP44645.1| putative reverse transcriptase [Oryza sativa Japo...    56   3e-06
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...    55   9e-06

>gb|EEE59647.1| hypothetical protein OsJ_12023 [Oryza sativa Japonica Group]
          Length = 1145

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
 Frame = -3

Query: 460  WPHITDNCCYLTTDASWDSNTKQVGLGFAIWNNFGYCIGAGHDRNTSAD-PEEAEARAIR 284
            W  +      + +DA+  S+++ +G+G  I +N G C+ A  +  +    PE AEA AIR
Sbjct: 987  WQPLPAGVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAIR 1046

Query: 283  GGLEFLQRMQIRNIAILTDCQRLAEILESRGTNLSWGATSVAHDIYASISVLDACTFYYI 104
              L   +   +++I + +DC  +   +++ G + S G   V  DI    S    C+F ++
Sbjct: 1047 RALGLAKEEGLQHIVMASDCLTVIRRIQTSGRDRS-GVGCVIEDIKKLASTFVLCSFMHV 1105

Query: 103  SRNSNVVADALA 68
            +R SN+ A +LA
Sbjct: 1106 NRLSNLAAHSLA 1117


>gb|EEC75888.1| hypothetical protein OsI_12930 [Oryza sativa Indica Group]
          Length = 834

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
 Frame = -3

Query: 460  WPHITDNCCYLTTDASWDSNTKQVGLGFAIWNNFGYCIGAGHDRNTSAD-PEEAEARAIR 284
            W  +      + +DA+  S+++ +G+G  I +N G C+ A  +  +    PE AEA AIR
Sbjct: 676  WQPLPAGVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAIR 735

Query: 283  GGLEFLQRMQIRNIAILTDCQRLAEILESRGTNLSWGATSVAHDIYASISVLDACTFYYI 104
              L   +   +++I + +DC  +   +++ G + S G   V  DI    S    C+F ++
Sbjct: 736  RALGLAKEEGLQHIVMASDCLTVIRRIQTSGRDRS-GVGCVIEDIKKLASTFVLCSFMHV 794

Query: 103  SRNSNVVADALA 68
            +R SN+ A +LA
Sbjct: 795  NRLSNLAAHSLA 806


>gb|AAU89136.1| F-box domain containing protein [Oryza sativa Japonica Group]
          Length = 855

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
 Frame = -3

Query: 460  WPHITDNCCYLTTDASWDSNTKQVGLGFAIWNNFGYCIGAGHDRNTSAD-PEEAEARAIR 284
            W  +      + +DA+  S+++ +G+G  I +N G C+ A  +  +    PE AEA AIR
Sbjct: 697  WQPLPAGVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAIR 756

Query: 283  GGLEFLQRMQIRNIAILTDCQRLAEILESRGTNLSWGATSVAHDIYASISVLDACTFYYI 104
              L   +   +++I + +DC  +   +++ G + S G   V  DI    S    C+F ++
Sbjct: 757  RALGLAKEEGLQHIVMASDCLTVIRRIQTSGRDRS-GVGCVIEDIKKLASTFVLCSFMHV 815

Query: 103  SRNSNVVADALA 68
            +R SN+ A +LA
Sbjct: 816  NRLSNLAAHSLA 827


>gb|AAP44645.1| putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 404

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
 Frame = -3

Query: 460 WPHITDNCCYLTTDASWDSNTKQVGLGFAIWNNFGYCIGAGHDRNTSAD-PEEAEARAIR 284
           W  +      + +DA+  S+++ +G+G  I +N G C+ A  +  +    PE AEA AIR
Sbjct: 246 WQPLPAGVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAIR 305

Query: 283 GGLEFLQRMQIRNIAILTDCQRLAEILESRGTNLSWGATSVAHDIYASISVLDACTFYYI 104
             L   +   +++I + +DC  +   +++ G + S G   V  DI    S    C+F ++
Sbjct: 306 RALGLAKEEGLQHIVMASDCLTVIRRIQTSGRDRS-GVGCVIEDIKKLASTFVLCSFMHV 364

Query: 103 SRNSNVVADALA 68
           +R SN+ A +LA
Sbjct: 365 NRLSNLAAHSLA 376


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
            Japonica Group]
          Length = 1382

 Score = 54.7 bits (130), Expect = 9e-06
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
 Frame = -3

Query: 430  LTTDASWDSNTKQVGLGFAIWNNFGYCIGAGHDRNTSAD-PEEAEARAIRGGLEFLQRMQ 254
            + +DA+  S+++ +G+G  I +N G C+ A  +  +    PE AEA AIR  L   +   
Sbjct: 1234 INSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAIRRALGLAKEEG 1293

Query: 253  IRNIAILTDCQRLAEILESRGTNLSWGATSVAHDIYASISVLDACTFYYISRNSNVVADA 74
            + +I + +DC  +   +++ G + S G   V  DI    S    C+F +++R SN+ A +
Sbjct: 1294 LEHIVMASDCLTVIRRIQTSGRDRS-GVGCVIEDIKKLASTFVLCSFMHVNRLSNLAAHS 1352

Query: 73   LA 68
            LA
Sbjct: 1353 LA 1354