BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029651
         (1348 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   388   e-105
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                365   2e-98
ref|XP_003543991.1| PREDICTED: uncharacterized protein LOC100811...   364   3e-98
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   361   3e-97
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           360   5e-97

>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  388 bits (997), Expect = e-105
 Identities = 187/437 (42%), Positives = 281/437 (64%)
 Frame = +2

Query: 38   PEHMEEIDFTMMNDIQVEQLDQNTQDELIKEITRDEIIECLSRIDSDKALGNGGFSSLFF 217
            P   E +  T +  +   +     Q  LI+ +T +EI + L R+ SDK+ G  G++S FF
Sbjct: 422  PNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFF 481

Query: 218  KATWRIIGDDFVSAVKNFFRSGMLLQEVNSTCITLIPKVHKPNSLGDYRPIACCNVIYKC 397
            KATW IIGD+F  AV++FF  G L + +NST + LIPK  +   + DYRPI+CCNV+YK 
Sbjct: 482  KATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKV 541

Query: 398  ITKIMTCRMKMFMPKVISLNQSAFISGRSIHDNILLSHELLHNYHRDNGPPRCAAKIDLR 577
            I+KI+  R+K+ +PK I+ NQSAF+  R + +N+LL+ EL+ +YH+D    RCA KID+ 
Sbjct: 542  ISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDIS 601

Query: 578  KAYDCIRWEAVRFALTRIGVPLVFVNWIQKCIETPRYSIMINGTPFGYFKGKRGIRQGDP 757
            KA+D ++W  +    T +G P  F++WI  CI T  +S+ +NG   GYF+  RG+RQG  
Sbjct: 602  KAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCA 661

Query: 758  MSPYLFVLVMEFFTQMLRQRVEEGDYRLHYKCRNPPITHLSFADDLIAFMNGDLDTVRTL 937
            +SPYLFV+ M+  ++ML +      +  H KC+   +THLSFADDL+   +G + ++  +
Sbjct: 662  LSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERI 721

Query: 938  KDTLMKFKSCSGLQVNLEKSNMFYAGMDAAICTQMESIIQFQKGTLPVKYLGLPLITTRL 1117
                 +F   SGL+++LEKS ++ AG+ A    ++     F  G LPV+YLGLPLIT RL
Sbjct: 722  IKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRL 781

Query: 1118 KATDCMPLIDKVRNKIQAWKGRALSYAGRLQLLKAVLNNMSIYWISSFVLPQQTIDEINQ 1297
              TDC+PL+++VR +I +W  R LSYAGRL L+ +VL ++  +W+++F LP++ I E+ +
Sbjct: 782  STTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEK 841

Query: 1298 MCRNFLWSGPECTTSHA 1348
            MC  FLWSG E  ++ A
Sbjct: 842  MCSAFLWSGTEMNSNKA 858


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  365 bits (936), Expect = 2e-98
 Identities = 179/413 (43%), Positives = 265/413 (64%)
 Frame = +2

Query: 110  QDELIKEITRDEIIECLSRIDSDKALGNGGFSSLFFKATWRIIGDDFVSAVKNFFRSGML 289
            QD L +E+T +E  + L  + S+K  G  G++S FFKATW I G DF++A+K+FF  G L
Sbjct: 19   QDMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFIKGFL 78

Query: 290  LQEVNSTCITLIPKVHKPNSLGDYRPIACCNVIYKCITKIMTCRMKMFMPKVISLNQSAF 469
             + +N+T + LIPK  +   + DYRPI+CCNVIYK I+KI+  R+K+ +P  I  NQSAF
Sbjct: 79   PKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAF 138

Query: 470  ISGRSIHDNILLSHELLHNYHRDNGPPRCAAKIDLRKAYDCIRWEAVRFALTRIGVPLVF 649
            +  R + +N+LL+ EL+ +YH+D+  PRCA KID+ KA+D ++W+ +   L  +  P  F
Sbjct: 139  VRERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENF 198

Query: 650  VNWIQKCIETPRYSIMINGTPFGYFKGKRGIRQGDPMSPYLFVLVMEFFTQMLRQRVEEG 829
             +WI+ CI T  +S+ +NG   G+F  KRG+RQG  +SPYLFV+ M   + M+       
Sbjct: 199  CHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHR 258

Query: 830  DYRLHYKCRNPPITHLSFADDLIAFMNGDLDTVRTLKDTLMKFKSCSGLQVNLEKSNMFY 1009
            +   H KC+   +THL FADDL+ F++G   +V  + +   +F   SGL ++LEKS ++ 
Sbjct: 259  NIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYL 318

Query: 1010 AGMDAAICTQMESIIQFQKGTLPVKYLGLPLITTRLKATDCMPLIDKVRNKIQAWKGRAL 1189
            AG+       + S   F  G LPV+YLGLPL+T ++   D  PL+DKVR+KI +W  R+L
Sbjct: 319  AGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSL 378

Query: 1190 SYAGRLQLLKAVLNNMSIYWISSFVLPQQTIDEINQMCRNFLWSGPECTTSHA 1348
            SYAGRL L+ +V+ ++S +W+S++ LP   I EI ++C  FLWSGPE     A
Sbjct: 379  SYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKA 431


>ref|XP_003543991.1| PREDICTED: uncharacterized protein LOC100811508 [Glycine max]
          Length = 1441

 Score =  364 bits (934), Expect = 3e-98
 Identities = 178/440 (40%), Positives = 272/440 (61%), Gaps = 2/440 (0%)
 Frame = +2

Query: 17   YYQELYSPE--HMEEIDFTMMNDIQVEQLDQNTQDELIKEITRDEIIECLSRIDSDKALG 190
            +Y++L   E   +  ID   M +   +Q++   +  L+  IT  +I   L  I  DK+ G
Sbjct: 724  FYKKLMGTEDSQLHHIDIDAMRN--GKQVNMEQRRYLVSNITEQDIERALKGIGDDKSPG 781

Query: 191  NGGFSSLFFKATWRIIGDDFVSAVKNFFRSGMLLQEVNSTCITLIPKVHKPNSLGDYRPI 370
              GF + FFKA+W I+ +D ++ +  FF  G L +  N+T +TLIPK      + DYRPI
Sbjct: 782  IDGFGAKFFKASWCIVKEDVIAVILEFFNIGRLYRGFNNTVVTLIPKGDNARYVKDYRPI 841

Query: 371  ACCNVIYKCITKIMTCRMKMFMPKVISLNQSAFISGRSIHDNILLSHELLHNYHRDNGPP 550
            A C  +YK I KI+T R+   +P +IS +Q+AF+ G++IH++ILL++ELL+ Y R  G P
Sbjct: 842  AGCTTVYKIIAKIITERLGKILPSIISHSQAAFVPGQNIHNHILLAYELLNGYGRKGGTP 901

Query: 551  RCAAKIDLRKAYDCIRWEAVRFALTRIGVPLVFVNWIQKCIETPRYSIMINGTPFGYFKG 730
            R   ++DL KAYD + W A+   L  IG+P+ FV+WI   + T  Y   +NGT +   + 
Sbjct: 902  RVMMQLDLHKAYDMVNWRAMECILKEIGLPMQFVSWIMTGVSTVSYRFNVNGTYYDIMQA 961

Query: 731  KRGIRQGDPMSPYLFVLVMEFFTQMLRQRVEEGDYRLHYKCRNPPITHLSFADDLIAFMN 910
            KRGIRQGDPMSP LFV++ME+  + L +  +  D+  H KC    +T+L+FADD++ F  
Sbjct: 962  KRGIRQGDPMSPMLFVIIMEYLHRTLVKMQQNPDFNHHSKCEKIGLTNLTFADDVLLFCR 1021

Query: 911  GDLDTVRTLKDTLMKFKSCSGLQVNLEKSNMFYAGMDAAICTQMESIIQFQKGTLPVKYL 1090
            GD  +V  + +T+ KF   +GL+VN  K  MF+ GMD      +  I  F +G LPV+YL
Sbjct: 1022 GDSKSVSMMMETIRKFSDSTGLKVNPAKCQMFFGGMDGCSKENLRRITDFAEGKLPVRYL 1081

Query: 1091 GLPLITTRLKATDCMPLIDKVRNKIQAWKGRALSYAGRLQLLKAVLNNMSIYWISSFVLP 1270
            G+PL   RL     MPLIDK+ ++++ W  + LSYAGR+QL+K++ + +++YW+  F LP
Sbjct: 1082 GVPLSCKRLTIQQYMPLIDKIVDRVKHWTSKLLSYAGRIQLVKSITSAIAMYWMQCFPLP 1141

Query: 1271 QQTIDEINQMCRNFLWSGPE 1330
            Q  + +IN +CR+F+W+G +
Sbjct: 1142 QFVLRKINAICRSFVWTGKQ 1161


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  361 bits (926), Expect = 3e-97
 Identities = 173/437 (39%), Positives = 280/437 (64%)
 Frame = +2

Query: 38   PEHMEEIDFTMMNDIQVEQLDQNTQDELIKEITRDEIIECLSRIDSDKALGNGGFSSLFF 217
            P   E I    + D+   +   + ++ L   ++ +EI + +  + +DK+ G  G+++ F+
Sbjct: 310  PNDFEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFY 369

Query: 218  KATWRIIGDDFVSAVKNFFRSGMLLQEVNSTCITLIPKVHKPNSLGDYRPIACCNVIYKC 397
            K  W IIG +F+ A+++FF  G L + +NST + LIPK  +   + DYRPI+CCNV+YK 
Sbjct: 370  KGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKV 429

Query: 398  ITKIMTCRMKMFMPKVISLNQSAFISGRSIHDNILLSHELLHNYHRDNGPPRCAAKIDLR 577
            I+KI+  R+K+ +PK I  NQSAF+  R + +N+LL+ E++ +YH+D+   RCA KID+ 
Sbjct: 430  ISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDIS 489

Query: 578  KAYDCIRWEAVRFALTRIGVPLVFVNWIQKCIETPRYSIMINGTPFGYFKGKRGIRQGDP 757
            KA+D ++W+ +   L  +  P  F +WI  CI T  +S+ +NG   G F   R +RQG  
Sbjct: 490  KAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFSSARELRQGCS 549

Query: 758  MSPYLFVLVMEFFTQMLRQRVEEGDYRLHYKCRNPPITHLSFADDLIAFMNGDLDTVRTL 937
            +SPYLFV+ M+  ++ML + V    +  H KCR   +THLSFADDL+   +G + ++  +
Sbjct: 550  LSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSIDGI 609

Query: 938  KDTLMKFKSCSGLQVNLEKSNMFYAGMDAAICTQMESIIQFQKGTLPVKYLGLPLITTRL 1117
               L +F   SGL++++EKS M+ AG+ A++  ++     F  G LPV+YLGLPL++ RL
Sbjct: 610  VKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRL 669

Query: 1118 KATDCMPLIDKVRNKIQAWKGRALSYAGRLQLLKAVLNNMSIYWISSFVLPQQTIDEINQ 1297
             A+DC+PLI+++R KI+AW  R LS+AGRL L+ + L ++  +W+++F LP+  I EI++
Sbjct: 670  TASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRLPRACIREIDK 729

Query: 1298 MCRNFLWSGPECTTSHA 1348
            +C  FLWSG E +++ A
Sbjct: 730  LCSAFLWSGTELSSNKA 746


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  360 bits (924), Expect = 5e-97
 Identities = 179/443 (40%), Positives = 280/443 (63%), Gaps = 4/443 (0%)
 Frame = +2

Query: 8    CVKYYQELY----SPEHMEEIDFTMMNDIQVEQLDQNTQDELIKEITRDEIIECLSRIDS 175
            CV YY+ L     SP  ME+ D   MN +   +  Q+   EL K  T DEI      +  
Sbjct: 265  CVTYYERLLGSIESPFSMEQED---MNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPR 321

Query: 176  DKALGNGGFSSLFFKATWRIIGDDFVSAVKNFFRSGMLLQEVNSTCITLIPKVHKPNSLG 355
            +K  G  G+S  FF+ TW IIG + ++A+  FF SG LL++ N+T + LIPK     ++ 
Sbjct: 322  NKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTIS 381

Query: 356  DYRPIACCNVIYKCITKIMTCRMKMFMPKVISLNQSAFISGRSIHDNILLSHELLHNYHR 535
            ++RPI+C N +YK I+K++T R++  +  VI  +QSAF+ GRS+ +N+LL+ E++H Y+R
Sbjct: 382  EFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNR 441

Query: 536  DNGPPRCAAKIDLRKAYDCIRWEAVRFALTRIGVPLVFVNWIQKCIETPRYSIMINGTPF 715
             N  PR   K+DL+KA+D ++WE V  AL  + +P  ++NWI +CI TP ++I +NG   
Sbjct: 442  LNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGATG 501

Query: 716  GYFKGKRGIRQGDPMSPYLFVLVMEFFTQMLRQRVEEGDYRLHYKCRNPPITHLSFADDL 895
            G+F+  +G+RQGDP+SPYLFVL ME F+++L  R + G    H K  +  I+HL FADD+
Sbjct: 502  GFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDV 561

Query: 896  IAFMNGDLDTVRTLKDTLMKFKSCSGLQVNLEKSNMFYAGMDAAICTQMESIIQFQKGTL 1075
            + F +G   ++  + +TL  F   SGL+VN +KS +F AG+D +      +   F  GT 
Sbjct: 562  MIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDLSE-RITSAAYGFPAGTF 620

Query: 1076 PVKYLGLPLITTRLKATDCMPLIDKVRNKIQAWKGRALSYAGRLQLLKAVLNNMSIYWIS 1255
            P++YLGLPL+  +L+  D  PL++K+  ++++W  +ALS+AGR QL+ +V+  +  +W+S
Sbjct: 621  PIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMS 680

Query: 1256 SFVLPQQTIDEINQMCRNFLWSG 1324
            +F+LP+  I +I  +C  FLW+G
Sbjct: 681  TFLLPKGCIKKIESLCSKFLWAG 703