BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029562
         (410 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    66   1e-20
gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza ...    67   5e-19
gb|ABF97084.1| retrotransposon protein, putative, unclassified [...    67   5e-19
gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas...    64   2e-18
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...    68   6e-18

>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 66.2 bits (160), Expect(2) = 1e-20
 Identities = 30/57 (52%), Positives = 38/57 (66%)
 Frame = +2

Query: 230 KYLGVPIMLSQKKIEDFDYLVDRVNNKIKGWKARVLSQAGRATLIQSVAQATPLYAM 400
           KYLGVP +  +    ++ YLVDR+N K+ GWK + LS AGRATLIQS   + P Y M
Sbjct: 755 KYLGVPTINGRSSKREYQYLVDRINGKLAGWKTKTLSIAGRATLIQSAFSSIPYYTM 811



 Score = 58.2 bits (139), Expect(2) = 1e-20
 Identities = 25/48 (52%), Positives = 37/48 (77%)
 Frame = +3

Query: 21  LLYADDLIIFTKASMEESGALKNIFDTYCEASGPKINYDKSSLFFSRN 164
           L +ADDLI+F++AS+E++  +K   D +CEASG K+N DKS ++FS N
Sbjct: 685 LAFADDLILFSEASVEQAQVMKWCLDRFCEASGSKVNEDKSKIYFSAN 732


>gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1185

 Score = 67.4 bits (163), Expect(2) = 5e-19
 Identities = 30/61 (49%), Positives = 45/61 (73%)
 Frame = +2

Query: 227 DKYLGVPIMLSQKKIEDFDYLVDRVNNKIKGWKARVLSQAGRATLIQSVAQATPLYAMAT 406
           DKYLG+P M+   K + F +L+DRVNN+I G K ++LS  G+  LI+S+AQA P++AM+ 
Sbjct: 566 DKYLGLPAMIGVDKSDCFRHLIDRVNNRINGRKEKMLSTGGKEVLIKSIAQAIPVFAMSV 625

Query: 407 Y 409
           +
Sbjct: 626 F 626



 Score = 51.6 bits (122), Expect(2) = 5e-19
 Identities = 25/54 (46%), Positives = 34/54 (62%)
 Frame = +3

Query: 21  LLYADDLIIFTKASMEESGALKNIFDTYCEASGPKINYDKSSLFFSRNVKFRNR 182
           LL+ADD +I  +A    +  LK I D YC+ SG KI+  KSS+FFSRN    ++
Sbjct: 497 LLFADDSLILMQADKNNADHLKAILDIYCQNSGQKISEAKSSIFFSRNTAVEDK 550


>gb|ABF97084.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1184

 Score = 67.4 bits (163), Expect(2) = 5e-19
 Identities = 30/61 (49%), Positives = 45/61 (73%)
 Frame = +2

Query: 227 DKYLGVPIMLSQKKIEDFDYLVDRVNNKIKGWKARVLSQAGRATLIQSVAQATPLYAMAT 406
           DKYLG+P M+   K + F +L+DRVNN+I G K ++LS  G+  LI+S+AQA P++AM+ 
Sbjct: 566 DKYLGLPAMIGVDKSDCFRHLIDRVNNRINGRKEKMLSTGGKEVLIKSIAQAIPVFAMSV 625

Query: 407 Y 409
           +
Sbjct: 626 F 626



 Score = 51.6 bits (122), Expect(2) = 5e-19
 Identities = 25/54 (46%), Positives = 34/54 (62%)
 Frame = +3

Query: 21  LLYADDLIIFTKASMEESGALKNIFDTYCEASGPKINYDKSSLFFSRNVKFRNR 182
           LL+ADD +I  +A    +  LK I D YC+ SG KI+  KSS+FFSRN    ++
Sbjct: 497 LLFADDSLILMQADKNNADHLKAILDIYCQNSGQKISEAKSSIFFSRNTAVEDK 550


>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 653

 Score = 63.5 bits (153), Expect(2) = 2e-18
 Identities = 29/60 (48%), Positives = 43/60 (71%)
 Frame = +2

Query: 230 KYLGVPIMLSQKKIEDFDYLVDRVNNKIKGWKARVLSQAGRATLIQSVAQATPLYAMATY 409
           KYLG+P M+ + K   F+Y+ DR+ N+I G  +++LSQAG+  LI+SVAQA P Y M+ +
Sbjct: 341 KYLGLPSMIGRSKKSIFNYIKDRIWNRISGLSSKMLSQAGKEVLIKSVAQAIPSYCMSVF 400



 Score = 53.9 bits (128), Expect(2) = 2e-18
 Identities = 26/49 (53%), Positives = 34/49 (69%)
 Frame = +3

Query: 21  LLYADDLIIFTKASMEESGALKNIFDTYCEASGPKINYDKSSLFFSRNV 167
           LL+ADD  +F +A+  E+ ALK+I DTY  AS   IN  KS ++FSRNV
Sbjct: 271 LLFADDSFLFFRANENETRALKDILDTYANASDQLINMQKSEIYFSRNV 319


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 68.2 bits (165), Expect(2) = 6e-18
 Identities = 32/80 (40%), Positives = 49/80 (61%)
 Frame = +2

Query: 170 VQESLKAKKIWKMKLFDPKDKYLGVPIMLSQKKIEDFDYLVDRVNNKIKGWKARVLSQAG 349
           V +  +   I  M+  D  +KYLG+P +  + K   FD L+DR+  K++GWK ++LS+AG
Sbjct: 733 VSQKDELTNILNMRQVDRHEKYLGIPSISGRSKKAIFDSLIDRIWKKLQGWKEKLLSRAG 792

Query: 350 RATLIQSVAQATPLYAMATY 409
           +  L++SV QA P Y M  Y
Sbjct: 793 KEVLLKSVIQAIPTYLMGVY 812



 Score = 47.4 bits (111), Expect(2) = 6e-18
 Identities = 22/49 (44%), Positives = 34/49 (69%)
 Frame = +3

Query: 21  LLYADDLIIFTKASMEESGALKNIFDTYCEASGPKINYDKSSLFFSRNV 167
           L +ADD ++FT+A+ +E   + +I + Y  ASG KINY+KS + +SR V
Sbjct: 683 LFFADDSLLFTRANRQECTIIVDILNQYELASGQKINYEKSEVSYSRGV 731