BLASTX nr result
ID: Coptis25_contig00029559
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00029559
(579 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi... 84 1e-14
ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi... 80 2e-13
ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t... 76 4e-12
ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 74 2e-11
ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containi... 74 2e-11
>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 84.3 bits (207), Expect = 1e-14
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = +2
Query: 2 ADGKYDDAKRIRKIMKDRGVEKTPGCSSIDLNG*VHGFIAGEETHP*MEEIYQVLENMNE 181
A GK D +RIRK+M++RGV+K PGCSS+ +NG VH FIAGEETH MEE+++VLE MN+
Sbjct: 455 AAGKQDHVRRIRKMMENRGVDKAPGCSSVKINGVVHEFIAGEETHLQMEEVHRVLEKMNK 514
Query: 182 LLDS*GLN 205
+ G N
Sbjct: 515 QMGYSGFN 522
Score = 64.7 bits (156), Expect = 1e-08
Identities = 35/84 (41%), Positives = 53/84 (63%)
Frame = +1
Query: 325 YSGMLLEGPQNIK*HGYYIGVQPKSEN*GCLADFLSRAELFEEAKEVVQRISYSCSTSEI 504
YSGM E + + ++PKSE+ GC+ D L RA L +EAKE++ ++ S S +E
Sbjct: 350 YSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKELILKMPNSSSPTEQ 409
Query: 505 AIARREILASCCVHQKTQLAGVAA 576
AIA R +L++CC H +T++A AA
Sbjct: 410 AIAWRALLSACCSHGQTEVAEDAA 433
>ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 80.5 bits (197), Expect = 2e-13
Identities = 36/63 (57%), Positives = 51/63 (80%)
Frame = +2
Query: 2 ADGKYDDAKRIRKIMKDRGVEKTPGCSSIDLNG*VHGFIAGEETHP*MEEIYQVLENMNE 181
A GK+ DA+R+R +M+++GV+K PGCSS++++G V FIAGEETHP MEEI+ VLE ++
Sbjct: 456 ASGKHSDARRVRNMMRNKGVDKAPGCSSVEIDGVVSEFIAGEETHPQMEEIHSVLEILHM 515
Query: 182 LLD 190
LD
Sbjct: 516 QLD 518
Score = 64.7 bits (156), Expect = 1e-08
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 325 YSGMLLEGPQNIK*HGYYIGVQPKSEN*GCLADFLSRAELFEEAKEVVQRI-SYSCSTSE 501
YSGM EG Q + ++PKSE+ GCL D LSRA LF EA +++RI S S + SE
Sbjct: 350 YSGMAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLLSRAGLFGEAMVMIRRITSTSWNGSE 409
Query: 502 IAIARREILASCCVHQKTQLAGVAA 576
+A R L++CC H + QLA AA
Sbjct: 410 ETLAWRAFLSACCNHGQAQLAERAA 434
>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
protein [Medicago truncatula]
Length = 525
Score = 76.3 bits (186), Expect = 4e-12
Identities = 34/63 (53%), Positives = 48/63 (76%)
Frame = +2
Query: 2 ADGKYDDAKRIRKIMKDRGVEKTPGCSSIDLNG*VHGFIAGEETHP*MEEIYQVLENMNE 181
A GK+ DA+R+R +MK +G K PGCSS++++G + FIAGE+THP MEEI+ VL+ M+
Sbjct: 460 ASGKHSDARRVRDMMKIKGTNKAPGCSSVEIDGVISEFIAGEKTHPQMEEIHSVLKKMHM 519
Query: 182 LLD 190
LD
Sbjct: 520 QLD 522
Score = 70.1 bits (170), Expect = 3e-10
Identities = 39/84 (46%), Positives = 53/84 (63%)
Frame = +1
Query: 325 YSGMLLEGPQNIK*HGYYIGVQPKSEN*GCLADFLSRAELFEEAKEVVQRISYSCSTSEI 504
YSGM EG + + PKSE+ GCL D LSRA LFEEA ++++I+ S + SE
Sbjct: 353 YSGMAYEGLMLLDKMCSVYNIVPKSEHYGCLVDLLSRAGLFEEAMVMIRKITNSWNGSEE 412
Query: 505 AIARREILASCCVHQKTQLAGVAA 576
+A R L++CC H +TQLA +AA
Sbjct: 413 TLAWRAFLSACCNHGETQLAELAA 436
>ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 73.6 bits (179), Expect = 2e-11
Identities = 34/58 (58%), Positives = 47/58 (81%)
Frame = +2
Query: 8 GKYDDAKRIRKIMKDRGVEKTPGCSSIDLNG*VHGFIAGEETHP*MEEIYQVLENMNE 181
GK++DAKR+R +MK +GVEK PGCSSI +NG V+ FIAGE+TH ++ I+ VLE +N+
Sbjct: 457 GKHEDAKRVRNMMKLKGVEKVPGCSSIKVNGVVNEFIAGEKTHRHIDNIHLVLEELNK 514
Score = 67.0 bits (162), Expect = 2e-09
Identities = 38/83 (45%), Positives = 52/83 (62%)
Frame = +1
Query: 328 SGMLLEGPQNIK*HGYYIGVQPKSEN*GCLADFLSRAELFEEAKEVVQRISYSCSTSEIA 507
SGM+ EG + ++PKSE+ GC+ D LSR FEEA+ V+QR+ + S SE A
Sbjct: 351 SGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEA 410
Query: 508 IARREILASCCVHQKTQLAGVAA 576
+A R L++CC H +TQ A VAA
Sbjct: 411 VAWRAFLSACCKHGQTQQAEVAA 433
>ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 73.6 bits (179), Expect = 2e-11
Identities = 34/58 (58%), Positives = 47/58 (81%)
Frame = +2
Query: 8 GKYDDAKRIRKIMKDRGVEKTPGCSSIDLNG*VHGFIAGEETHP*MEEIYQVLENMNE 181
GK++DAKR+R +MK +GVEK PGCSSI +NG V+ FIAGE+TH ++ I+ VLE +N+
Sbjct: 457 GKHEDAKRVRNMMKLKGVEKVPGCSSIKVNGVVNEFIAGEKTHRHIDNIHLVLEELNK 514
Score = 67.0 bits (162), Expect = 2e-09
Identities = 38/83 (45%), Positives = 52/83 (62%)
Frame = +1
Query: 328 SGMLLEGPQNIK*HGYYIGVQPKSEN*GCLADFLSRAELFEEAKEVVQRISYSCSTSEIA 507
SGM+ EG + ++PKSE+ GC+ D LSR FEEA+ V+QR+ + S SE A
Sbjct: 351 SGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEA 410
Query: 508 IARREILASCCVHQKTQLAGVAA 576
+A R L++CC H +TQ A VAA
Sbjct: 411 VAWRAFLSACCKHGQTQQAEVAA 433