BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029555
         (469 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    75   6e-12
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers...    72   5e-11
gb|ABA96203.1| retrotransposon protein, putative, unclassified, ...    71   8e-11
gb|EEE52627.1| hypothetical protein OsJ_34967 [Oryza sativa Japo...    71   8e-11
gb|EEC68711.1| hypothetical protein OsI_37193 [Oryza sativa Indi...    71   8e-11

>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
 Frame = -1

Query: 469  LFP-STIGKIIKQVMIRPLVAGEDTIQWMDTRNGCLSVKTAY--------HRMTGNGDME 317
            LFP   +  I+KQ   RPL   ED+  W+ + NG  SVKT Y        HR+     ++
Sbjct: 979  LFPWKDVEIILKQ---RPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVK 1035

Query: 316  QSSSFNTNTVKAIWKAPVSANIILFLWKLYMGILPTGDLLRNKGIKGEFSCPLCWLELED 137
             S +   +    IW    +  I +FLWK   G +P  D LR +GI+ +  C +C  E E 
Sbjct: 1036 PSVN---SLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENET 1092

Query: 136  PLHIFFKCEWSKSVWFASNL 77
              HI F+C  ++ VW  ++L
Sbjct: 1093 INHILFECPLARQVWAITHL 1112


>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
 Frame = -1

Query: 466  FPSTIGKIIKQVMIRPLVAGEDTIQWMDTRNGCLSVKTAY----HRMTGNGDMEQSSSFN 299
            FP  + KI +    RP+V+ +D   W   ++G  SVK  Y    ++  G   +E     +
Sbjct: 830  FPDDVVKIREN---RPVVSLDDFWIWKHNKSGDYSVKLGYWLASNQNLGQVAIEAMMQPS 886

Query: 298  TNTVKA-IWKAPVSANIILFLWKLYMGILPTGDLLRNKGIKGEFSCPLCWLELEDPLHIF 122
             N +K  +WK      I +FLWK+  G +P  DLL  +G+K +  C  C  E E   H+ 
Sbjct: 887  LNDLKTQVWKLQTEPKIKVFLWKVLSGAIPVVDLLSYRGMKLDSRCQTCGCEGESIQHVL 946

Query: 121  FKCEWSKSVWFASNL 77
            F C + + VW  SN+
Sbjct: 947  FSCSFPRQVWAMSNI 961


>gb|ABA96203.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
          Length = 1378

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
 Frame = -1

Query: 436 QVMIRPLVAG-EDTIQWMDTRNGCLSVKTAYHRMTG------NGDMEQSSSFNTNTVKAI 278
           ++M  P+ AG +D + W   R+G  SVK+AYH          +  M+ S++  +   K +
Sbjct: 451 RIMQIPIRAGRDDLVAWQYNRSGTFSVKSAYHCQWDYKFGERSAQMQASTASRSRLWKRL 510

Query: 277 WKAPVSANIILFLWKLYMGILPTGDLLRNKGIKGEFSCPLCWLELEDPLHIFFKCEWSKS 98
           W   V A I +F W+   G++P   +L N+ +     CP+C    ED  H+ F C  +K 
Sbjct: 511 WNLKVPAKIKIFGWRALKGLVPCRAILANRHVGDSGGCPVCQNGPEDIKHMIFTCARAKQ 570

Query: 97  VWFASNLGGQPR 62
           VW  ++LG + R
Sbjct: 571 VW--NSLGVEDR 580


>gb|EEE52627.1| hypothetical protein OsJ_34967 [Oryza sativa Japonica Group]
          Length = 1395

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
 Frame = -1

Query: 436 QVMIRPLVAG-EDTIQWMDTRNGCLSVKTAYHRMTG------NGDMEQSSSFNTNTVKAI 278
           ++M  P+ AG +D + W   R+G  SVK+AYH          +  M+ S++  +   K +
Sbjct: 481 RIMQIPIRAGRDDLVAWQYNRSGTFSVKSAYHCQWDYKFGERSAQMQASTASRSRLWKRL 540

Query: 277 WKAPVSANIILFLWKLYMGILPTGDLLRNKGIKGEFSCPLCWLELEDPLHIFFKCEWSKS 98
           W   V A I +F W+   G++P   +L N+ +     CP+C    ED  H+ F C  +K 
Sbjct: 541 WNLKVPAKIKIFGWRALKGLVPCRAILANRHVGDSGGCPVCQNGPEDIKHMIFTCARAKQ 600

Query: 97  VWFASNLGGQPR 62
           VW  ++LG + R
Sbjct: 601 VW--NSLGVEDR 610


>gb|EEC68711.1| hypothetical protein OsI_37193 [Oryza sativa Indica Group]
          Length = 1546

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
 Frame = -1

Query: 436  QVMIRPLVAG-EDTIQWMDTRNGCLSVKTAYHRMTG------NGDMEQSSSFNTNTVKAI 278
            ++M  P+ AG +D + W   R+G  SVK+AYH          +  M+ S++  +   K +
Sbjct: 632  RIMQIPIRAGRDDLVAWQYNRSGTFSVKSAYHCQWDYKFGERSAQMQASTASRSRLWKRL 691

Query: 277  WKAPVSANIILFLWKLYMGILPTGDLLRNKGIKGEFSCPLCWLELEDPLHIFFKCEWSKS 98
            W   V A I +F W+   G++P   +L N+ +     CP+C    ED  H+ F C  +K 
Sbjct: 692  WNLKVPAKIKIFGWRALKGLVPCRAILANRHVGDSGGCPVCQNGPEDIKHMIFTCARAKQ 751

Query: 97   VWFASNLGGQPR 62
            VW  ++LG + R
Sbjct: 752  VW--NSLGVEDR 761