BLASTX nr result
ID: Coptis25_contig00029486
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00029486
(709 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containi... 383 e-104
ref|XP_002319164.1| predicted protein [Populus trichocarpa] gi|2... 375 e-102
ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containi... 352 5e-95
gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japo... 348 5e-94
ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group] g... 348 5e-94
>ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Vitis vinifera]
Length = 989
Score = 383 bits (983), Expect = e-104
Identities = 181/235 (77%), Positives = 210/235 (89%)
Frame = +3
Query: 3 EMRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNK 182
EM E+N +SWNAMITGYSQHG G+EA+ LFEEMKQ GL PN VTF+GVLSACSHVGLVN+
Sbjct: 677 EMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNE 736
Query: 183 GLSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLSAC 362
GLSY +SMS EHG+VP PEHY CVVD+LGRA LL A+ F+EEMPI PDAM+WRTLLSAC
Sbjct: 737 GLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSAC 796
Query: 363 TVHKNVDIGELAARHLLYLEPQDSASYVLLSNIYAVAKKWDCRNQMRQMMKDRGVKKEPG 542
TVHKN++IGE AARHLL LEP+DSA+YVLLSN+YAV+ KWD R++ RQMMKDRGVKKEPG
Sbjct: 797 TVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPG 856
Query: 543 RSWIEVKNSVHAFFVGDRLHPLADKIYDYLEDLNERVSEIGYTQDRNSLLHDIEQ 707
RSWIEVKNS+HAFFVGDRLHPLA++IY+Y++DLNER EIGY QDR +LL+D+EQ
Sbjct: 857 RSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQ 911
Score = 65.5 bits (158), Expect = 1e-08
Identities = 38/117 (32%), Positives = 62/117 (52%)
Frame = +3
Query: 6 MRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNKG 185
+RE + +SW AMI GY+QH EAL LF+EM+ QG+ + + F +SAC+ + +N+G
Sbjct: 476 LREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQG 535
Query: 186 LSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLS 356
+ + S G +V + R G + A + E++ A D + W L+S
Sbjct: 536 -QQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKID-AKDNISWNALIS 590
Score = 61.2 bits (147), Expect = 2e-07
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 10/185 (5%)
Frame = +3
Query: 15 RNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNKGLSY 194
++ ISWNA+I+G++Q G EAL +F +M Q G+ N TF +SA ++ + +G
Sbjct: 580 KDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQG-KQ 638
Query: 195 LKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLSACTVH- 371
+ +M I+ G E ++ + + G +E AK EMP + + W +++ + H
Sbjct: 639 IHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMP-EKNVVSWNAMITGYSQHG 697
Query: 372 ---KNVDIGE------LAARHLLYLEPQDSASYVLLSNIYAVAKKWDCRNQMRQMMKDRG 524
+ V + E L H+ ++ + S+V L N + + R M K+ G
Sbjct: 698 YGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVN--------EGLSYFRSMSKEHG 749
Query: 525 VKKEP 539
+ +P
Sbjct: 750 LVPKP 754
>ref|XP_002319164.1| predicted protein [Populus trichocarpa] gi|222857540|gb|EEE95087.1|
predicted protein [Populus trichocarpa]
Length = 989
Score = 375 bits (964), Expect = e-102
Identities = 176/235 (74%), Positives = 207/235 (88%)
Frame = +3
Query: 3 EMRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNK 182
EM E+N +SWNAMITGYSQHG GNEA+ LFE+MKQ G PN VTF+GVLSACSHVGLV K
Sbjct: 677 EMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTK 736
Query: 183 GLSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLSAC 362
GL Y +SMS EHG+VP P HYACVVD++ RAG L RA+ F+EEMPI PDA +WRTLLSAC
Sbjct: 737 GLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSAC 796
Query: 363 TVHKNVDIGELAARHLLYLEPQDSASYVLLSNIYAVAKKWDCRNQMRQMMKDRGVKKEPG 542
TVHKNV++GE AA+HLL LEP+DSA+YVLLSN+YAV+ KWDCR+Q RQMM++RGVKKEPG
Sbjct: 797 TVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPG 856
Query: 543 RSWIEVKNSVHAFFVGDRLHPLADKIYDYLEDLNERVSEIGYTQDRNSLLHDIEQ 707
RSWIEVKNSVHAF+VGDRLHPLADKIY++L +LN++ +EIGY QDR SLL+D+EQ
Sbjct: 857 RSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQ 911
Score = 57.8 bits (138), Expect = 2e-06
Identities = 34/117 (29%), Positives = 62/117 (52%)
Frame = +3
Query: 6 MRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNKG 185
+ E + +SW A+I+GY+QH EAL F+EM +G+ + + F +SAC+ + +N+G
Sbjct: 476 LTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQG 535
Query: 186 LSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLS 356
+ + S G +V + R G ++ A + E++ A D++ W L+S
Sbjct: 536 -RQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKID-AKDSISWNGLIS 590
>ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Glycine max]
Length = 1047
Score = 352 bits (902), Expect = 5e-95
Identities = 170/235 (72%), Positives = 196/235 (83%)
Frame = +3
Query: 3 EMRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNK 182
EM E+N+ISWNAM+TGYSQHG G +AL LFE+MKQ G+ PN VTF+GVLSACSHVGLV++
Sbjct: 735 EMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDE 794
Query: 183 GLSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLSAC 362
G+ Y +SM HG+VP PEHYACVVD+LGR+GLL RA+ FVEEMPI PDAMV RTLLSAC
Sbjct: 795 GIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSAC 854
Query: 363 TVHKNVDIGELAARHLLYLEPQDSASYVLLSNIYAVAKKWDCRNQMRQMMKDRGVKKEPG 542
VHKN+DIGE AA HLL LEP+DSA+YVLLSN+YAV KW CR++ RQMMKDRGVKKEPG
Sbjct: 855 IVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPG 914
Query: 543 RSWIEVKNSVHAFFVGDRLHPLADKIYDYLEDLNERVSEIGYTQDRNSLLHDIEQ 707
RSWIEV NSVHAFF GD+ HP DKIY+YL DLNE +E GY NSLL+D E+
Sbjct: 915 RSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAER 969
Score = 60.5 bits (145), Expect = 3e-07
Identities = 35/117 (29%), Positives = 62/117 (52%)
Frame = +3
Query: 6 MRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNKG 185
++E++ +SW AMI GY+QH EAL LF+EM+ QG+ + + F +SAC+ + +N+G
Sbjct: 534 LKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQG 593
Query: 186 LSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLS 356
+ + + G +V + R G + R F + + D + W +L+S
Sbjct: 594 -QQIHAQACVSGYSDDLSVGNALVSLYARCGKV-RDAYFAFDKIFSKDNISWNSLIS 648
>gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 348 bits (894), Expect = 5e-94
Identities = 163/235 (69%), Positives = 201/235 (85%)
Frame = +3
Query: 3 EMRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNK 182
EM ERN++SWN +IT SQHG G EAL LF++MK++G+ PN VTF+GVL+ACSHVGLV +
Sbjct: 607 EMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEE 666
Query: 183 GLSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLSAC 362
GLSY KSMS E+GI P P+HYACV+D+ GRAG L+RAK F+EEMPIA DAMVWRTLLSAC
Sbjct: 667 GLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSAC 726
Query: 363 TVHKNVDIGELAARHLLYLEPQDSASYVLLSNIYAVAKKWDCRNQMRQMMKDRGVKKEPG 542
VHKN+++GE AA+HLL LEP DSASYVLLSN YAV +KW R+Q+R+MM+DRGV+KEPG
Sbjct: 727 KVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPG 786
Query: 543 RSWIEVKNSVHAFFVGDRLHPLADKIYDYLEDLNERVSEIGYTQDRNSLLHDIEQ 707
RSWIEVKN VHAFFVGDRLHPLA++IY++L +N+RV+++GY Q++ L HD EQ
Sbjct: 787 RSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQ 841
Score = 58.9 bits (141), Expect = 1e-06
Identities = 36/119 (30%), Positives = 66/119 (55%)
Frame = +3
Query: 3 EMRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNK 182
+M R+ +++N +I+G++Q G G AL +FEEM+ GL+P+ VT +L+AC+ +G + K
Sbjct: 203 DMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQK 262
Query: 183 GLSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLSA 359
G + L S + GI ++D+ + G +E A + + ++W +L A
Sbjct: 263 G-TQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSD-RTNVVLWNLMLVA 319
Score = 58.9 bits (141), Expect = 1e-06
Identities = 29/105 (27%), Positives = 55/105 (52%)
Frame = +3
Query: 6 MRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNKG 185
++E++ +SW +MI GY QH C +AL F+EM++ G+ P+ + +S C+ + + +G
Sbjct: 406 LKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQG 465
Query: 186 LSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPI 320
L + + G + +V++ R G + A EEM +
Sbjct: 466 LQIHARIYVS-GYSGDVSIWNALVNLYARCGRIREAFSSFEEMEL 509
Score = 58.9 bits (141), Expect = 1e-06
Identities = 35/123 (28%), Positives = 66/123 (53%)
Frame = +3
Query: 3 EMRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNK 182
EM ++ I+ N +++G++Q G EAL +F M Q G+ N TF+ LSA +++ + +
Sbjct: 506 EMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQ 565
Query: 183 GLSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLSAC 362
G + + I+ G E ++ + G+ G E AK+ EM + + W T++++C
Sbjct: 566 G-KQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSC 623
Query: 363 TVH 371
+ H
Sbjct: 624 SQH 626
Score = 58.5 bits (140), Expect = 1e-06
Identities = 36/118 (30%), Positives = 60/118 (50%)
Frame = +3
Query: 3 EMRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNK 182
E+ R+ +SW AM++GY+Q+G G EAL L+ +M + G+ P VLS+C+ L +
Sbjct: 102 ELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQ 161
Query: 183 GLSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLS 356
G + + +HG V+ + R G A+ +MP D + + TL+S
Sbjct: 162 G-RLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMP-HRDTVTFNTLIS 217
>ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa
Japonica Group]
Length = 1175
Score = 348 bits (894), Expect = 5e-94
Identities = 163/235 (69%), Positives = 201/235 (85%)
Frame = +3
Query: 3 EMRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNK 182
EM ERN++SWN +IT SQHG G EAL LF++MK++G+ PN VTF+GVL+ACSHVGLV +
Sbjct: 607 EMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEE 666
Query: 183 GLSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLSAC 362
GLSY KSMS E+GI P P+HYACV+D+ GRAG L+RAK F+EEMPIA DAMVWRTLLSAC
Sbjct: 667 GLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSAC 726
Query: 363 TVHKNVDIGELAARHLLYLEPQDSASYVLLSNIYAVAKKWDCRNQMRQMMKDRGVKKEPG 542
VHKN+++GE AA+HLL LEP DSASYVLLSN YAV +KW R+Q+R+MM+DRGV+KEPG
Sbjct: 727 KVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPG 786
Query: 543 RSWIEVKNSVHAFFVGDRLHPLADKIYDYLEDLNERVSEIGYTQDRNSLLHDIEQ 707
RSWIEVKN VHAFFVGDRLHPLA++IY++L +N+RV+++GY Q++ L HD EQ
Sbjct: 787 RSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQ 841
Score = 65.1 bits (157), Expect = 1e-08
Identities = 35/123 (28%), Positives = 68/123 (55%)
Frame = +3
Query: 3 EMRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNK 182
E+ +++I+WN +++G++Q G EAL +F M Q G+ N TF+ LSA +++ + +
Sbjct: 506 EIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQ 565
Query: 183 GLSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLSAC 362
G + + I+ G E ++ + G+ G E AK+ EM + + W T++++C
Sbjct: 566 G-KQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSC 623
Query: 363 TVH 371
+ H
Sbjct: 624 SQH 626
Score = 60.1 bits (144), Expect = 4e-07
Identities = 32/117 (27%), Positives = 60/117 (51%)
Frame = +3
Query: 6 MRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNKG 185
++E++ +SW +MI GY QH C +AL F+EM++ G+ P+ + +S C+ + + +G
Sbjct: 406 LKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQG 465
Query: 186 LSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLS 356
L + + G + +V++ R G + A EE+ D + W L+S
Sbjct: 466 LQIHARIYVS-GYSGDVSIWNALVNLYARCGRIREAFSSFEEIE-HKDEITWNGLVS 520
Score = 58.9 bits (141), Expect = 1e-06
Identities = 36/119 (30%), Positives = 66/119 (55%)
Frame = +3
Query: 3 EMRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNK 182
+M R+ +++N +I+G++Q G G AL +FEEM+ GL+P+ VT +L+AC+ +G + K
Sbjct: 203 DMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQK 262
Query: 183 GLSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLSA 359
G + L S + GI ++D+ + G +E A + + ++W +L A
Sbjct: 263 G-TQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSD-RTNVVLWNLMLVA 319
Score = 58.5 bits (140), Expect = 1e-06
Identities = 36/118 (30%), Positives = 60/118 (50%)
Frame = +3
Query: 3 EMRERNQISWNAMITGYSQHGCGNEALVLFEEMKQQGLTPNKVTFLGVLSACSHVGLVNK 182
E+ R+ +SW AM++GY+Q+G G EAL L+ +M + G+ P VLS+C+ L +
Sbjct: 102 ELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQ 161
Query: 183 GLSYLKSMSIEHGIVPGPEHYACVVDVLGRAGLLERAKIFVEEMPIAPDAMVWRTLLS 356
G + + +HG V+ + R G A+ +MP D + + TL+S
Sbjct: 162 G-RLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMP-HRDTVTFNTLIS 217