BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029475
         (721 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]    85   1e-14
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...    85   2e-14
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...    64   2e-08
ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|2...    57   5e-06

>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score = 85.1 bits (209), Expect = 1e-14
 Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
 Frame = -2

Query: 423 GFQTKSPFHLNSRKHSTFVTTREASYESARAFILSVTPEDSETQCKVPLKSYTSSFGTLQ 244
           G+      H+++ +   ++  +EAS++S R    SVT ED E+  K P K +  S G LQ
Sbjct: 64  GYSHNGLDHIDNHETDPYIQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQ 123

Query: 243 VME---SGSKELKMSLGKGLHTTWYDQIDDIRMPMQEYTSISSRGLREKEKSSFYLLCKN 73
             E   S  + +KM +GK  H   +  ++  + P+ E  S S  GL+  + S F LL +N
Sbjct: 124 TFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLEN 183

Query: 72  IEEIERIFVDEDLVALEREIYIQL 1
           ++ +E +F D ++V LER+I +QL
Sbjct: 184 LDILEEMFADSNMVRLERDIMVQL 207


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 55/151 (36%), Positives = 82/151 (54%), Gaps = 5/151 (3%)
 Frame = -2

Query: 438 LDLKCGFQTKSPFHLNS--RKHSTFVTTREASYESARAFILSVTPEDSETQCKVPLKSYT 265
           L+LK  F    P   NS  R  ++ V  +EAS++S R    SVT ED E+  K P K + 
Sbjct: 7   LNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFA 66

Query: 264 SSFGTLQVME---SGSKELKMSLGKGLHTTWYDQIDDIRMPMQEYTSISSRGLREKEKSS 94
            S G LQ  E   S  + +KM +GK  H   +  ++  + P+ E  S S  GL+  + S 
Sbjct: 67  CSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQASKASQ 126

Query: 93  FYLLCKNIEEIERIFVDEDLVALEREIYIQL 1
           F LL +N++ +E +F D ++V LER+I +QL
Sbjct: 127 FSLLLENLDILEEMFADSNMVRLERDIMVQL 157


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 560

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 5/151 (3%)
 Frame = -2

Query: 438 LDLKCGF---QTKSPFHLNSRKHSTFVTTREASYESARAFILSVTPEDSETQCKVPLKSY 268
           L+LK  F      SP  L+S   S+FV  REA+   +R   LSV  E+ +   + PLK+Y
Sbjct: 7   LNLKLDFPFHSPNSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDIAHRDPLKTY 66

Query: 267 TSSFG--TLQVMESGSKELKMSLGKGLHTTWYDQIDDIRMPMQEYTSISSRGLREKEKSS 94
             S+   T++   S  +  K++ GK  H    + I D  + ++E   +S    +E+  S 
Sbjct: 67  AYSYAVQTVENEHSQGEGFKVNFGKRSH-FGLNIIGDAEVSLKEDIFVSPSSTKER-TSR 124

Query: 93  FYLLCKNIEEIERIFVDEDLVALEREIYIQL 1
           F LL +N+  +E+ F D D   LE +I +QL
Sbjct: 125 FSLLLENLNILEQSFADSDASKLEEDILLQL 155


>ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|222854562|gb|EEE92109.1|
           predicted protein [Populus trichocarpa]
          Length = 559

 Score = 56.6 bits (135), Expect = 5e-06
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
 Frame = -2

Query: 408 SPFHLNSRKHSTFVTTR------EASYESARAFILSVTPEDSETQCKVPLKSYTSSFGTL 247
           SP   +S  +ST + +       EAS   AR   LSV  E+ +   K   KS+  S    
Sbjct: 13  SPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKHSFKSFACSSAAQ 72

Query: 246 QVMES--GSKELKMSLGKGLHTTWYDQIDDIRMPMQEYTSISSRGLREKEKSSFYLLCKN 73
            V       + LKM++ K  H +  + + + ++ ++E  S S   LRE+  S    L  N
Sbjct: 73  NVENDCLQMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHTRLRERMTSRISFLLDN 132

Query: 72  IEEIERIFVDEDLVALEREIYIQL 1
           ++ +E++  D D + LER+I +QL
Sbjct: 133 LDTLEKLVADLDALKLERDILLQL 156