BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029441
         (1275 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    90   1e-15
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    87   1e-14
gb|EEC81198.1| hypothetical protein OsI_24213 [Oryza sativa Indi...    78   4e-12
ref|NP_001174960.1| Os06g0683500 [Oryza sativa Japonica Group] g...    76   2e-11
gb|EEE66235.1| hypothetical protein OsJ_22399 [Oryza sativa Japo...    76   2e-11

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 90.1 bits (222), Expect = 1e-15
 Identities = 56/219 (25%), Positives = 104/219 (47%), Gaps = 6/219 (2%)
 Frame = -1

Query: 699 CVCASATENLEHLWWSCMVARDMWNWITARFKLRADFSDFSEAINKGKGLNSLLSNLWMA 520
           C C    E   H++  C V   +W+W+    K      DFS  +N    ++ ++ ++  +
Sbjct: 115 CFCRKQAETSSHIFLQCPVTLQLWDWL---LKATDQHLDFSSILN----ISRMVQHVMNS 167

Query: 519 AVLGGMVALWNNRNKIFHEDLPSKMSSCKSFVRKQIM---VTVSLSKVTCNLQDKDMLRI 349
           A++  M ++W   N  + + +   MS+  + +  +++     + + K   ++QD  + R+
Sbjct: 168 AIVHIMWSIWLECNNKYFDGVQKPMSTLFNTILAEVLRLSFMLDIVKGASSMQDFKLARL 227

Query: 348 WCIEMKARIAPRILPCT---WSLPEENVTKVNTDGAAKGNPGQAGVGVVGRDSNGAFSFV 178
           + I  K     R+ PC    W  P     K+N DG+  G+P    +GV+ R S   F   
Sbjct: 228 FSIPFKTN---RVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGA 284

Query: 177 YSRNIGTATNFIAECSVIIEGLEVSLSKGRSSIWIESDS 61
           +++NIG AT   AE S  +  +E +     ++IWIE+DS
Sbjct: 285 FAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDS 323


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 86.7 bits (213), Expect = 1e-14
 Identities = 57/235 (24%), Positives = 112/235 (47%), Gaps = 3/235 (1%)
 Frame = -1

Query: 699 CVCASATENLEHLWWSCMVARDMWNWITARFKLRADFSDFSEAINKGKGLNS-LLSNLWM 523
           C C  + E+ +H+++ C V   +W+W+        D S   + + +  G  S L++N+  
Sbjct: 79  CFCMKSAESSQHIFFECHVTSRLWDWLGKGTDKLLDCSSCLQLLIRNWGSGSKLVNNILN 138

Query: 522 AAVLGGMVALWNNRNKIFHEDLPSKMSSCKSFVRKQIMVTVSLSKVTCN--LQDKDMLRI 349
           +A++  + ++W  RN+    +    M++  + +  ++ ++ SL  +  N  +QD  + ++
Sbjct: 139 SAIIHTIWSIWIERNQRCFHNKHQAMTTLFNIILAEVKMSFSLCMIKGNSAMQDYKVAKL 198

Query: 348 WCIEMKARIAPRILPCTWSLPEENVTKVNTDGAAKGNPGQAGVGVVGRDSNGAFSFVYSR 169
           + I  K +     L   W  P  ++ K+N DG++ G      +G+V RDSN  F    S 
Sbjct: 199 FNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFLGAISS 258

Query: 168 NIGTATNFIAECSVIIEGLEVSLSKGRSSIWIESDSKAAVIMS*RQLLLPLILRS 4
           NIG AT   AE    +  +E +       + +E+DS   V    + L +P  +R+
Sbjct: 259 NIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRA 313


>gb|EEC81198.1| hypothetical protein OsI_24213 [Oryza sativa Indica Group]
          Length = 206

 Score = 78.2 bits (191), Expect = 4e-12
 Identities = 38/83 (45%), Positives = 53/83 (63%)
 Frame = -1

Query: 297 WSLPEENVTKVNTDGAAKGNPGQAGVGVVGRDSNGAFSFVYSRNIGTATNFIAECSVIIE 118
           W  PEE  TK+N DG++K + G A +G V RD +GAF   Y+  IGTAT+ +AE + +  
Sbjct: 45  WRKPEEGWTKLNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALRR 104

Query: 117 GLEVSLSKGRSSIWIESDSKAAV 49
           GLE+++  G   +W E DSKA V
Sbjct: 105 GLELAVRNGWRRVWAEGDSKAVV 127


>ref|NP_001174960.1| Os06g0683500 [Oryza sativa Japonica Group]
           gi|52076651|dbj|BAD45551.1| hypothetical protein [Oryza
           sativa Japonica Group] gi|255677331|dbj|BAH93688.1|
           Os06g0683500 [Oryza sativa Japonica Group]
          Length = 240

 Score = 75.9 bits (185), Expect = 2e-11
 Identities = 37/83 (44%), Positives = 52/83 (62%)
 Frame = -1

Query: 297 WSLPEENVTKVNTDGAAKGNPGQAGVGVVGRDSNGAFSFVYSRNIGTATNFIAECSVIIE 118
           W  PEE   K+N DG++K + G A +G V RD +GAF   Y+  IGTAT+ +AE + +  
Sbjct: 79  WRKPEEGWMKLNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALRR 138

Query: 117 GLEVSLSKGRSSIWIESDSKAAV 49
           GLE+++  G   +W E DSKA V
Sbjct: 139 GLELAVRNGWRRVWAEGDSKAVV 161


>gb|EEE66235.1| hypothetical protein OsJ_22399 [Oryza sativa Japonica Group]
          Length = 192

 Score = 75.9 bits (185), Expect = 2e-11
 Identities = 37/83 (44%), Positives = 52/83 (62%)
 Frame = -1

Query: 297 WSLPEENVTKVNTDGAAKGNPGQAGVGVVGRDSNGAFSFVYSRNIGTATNFIAECSVIIE 118
           W  PEE   K+N DG++K + G A +G V RD +GAF   Y+  IGTAT+ +AE + +  
Sbjct: 45  WRKPEEGWMKLNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALRR 104

Query: 117 GLEVSLSKGRSSIWIESDSKAAV 49
           GLE+++  G   +W E DSKA V
Sbjct: 105 GLELAVRNGWRRVWAEGDSKAVV 127