BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029407
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEK78225.1| hypothetical chloroplast RF2 [Halophytum ameghinoi]     66   3e-20
gb|AEK78147.1| hypothetical chloroplast RF2 [Canella winterana]        63   4e-20
emb|CAP11933.1| ycf2 protein [Dioscorea schimperiana]                  63   6e-20
emb|CAI53855.1| ycf2 [Acorus calamus]                                  63   7e-20
ref|YP_319807.1| Ycf2 [Acorus calamus] gi|126022805|ref|YP_31982...    63   7e-20

>gb|AEK78225.1| hypothetical chloroplast RF2 [Halophytum ameghinoi]
          Length = 2253

 Score = 66.2 bits (160), Expect(3) = 3e-20
 Identities = 37/53 (69%), Positives = 38/53 (71%), Gaps = 7/53 (13%)
 Frame = +3

Query: 45  ENKTNAILLF-------LHLGSNPTEGSTRDQKLLKKQQDFSFVPSRRSENKE 182
           EN T +I  F       LHLGSNPTE STRDQKLLKKQQD SF  SRRSENKE
Sbjct: 485 ENPTRSIRSFFSGRWSELHLGSNPTERSTRDQKLLKKQQDVSFALSRRSENKE 537



 Score = 47.0 bits (110), Expect(3) = 3e-20
 Identities = 22/23 (95%), Positives = 23/23 (100%)
 Frame = +2

Query: 182 MVDIFKIITYLQNTVSIHPISSD 250
           MV+IFKIITYLQNTVSIHPISSD
Sbjct: 538 MVNIFKIITYLQNTVSIHPISSD 560



 Score = 29.6 bits (65), Expect(3) = 3e-20
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 253 GCDMVPKDEPD 285
           GCDM+PKDEPD
Sbjct: 562 GCDMIPKDEPD 572


>gb|AEK78147.1| hypothetical chloroplast RF2 [Canella winterana]
          Length = 2311

 Score = 63.2 bits (152), Expect(3) = 4e-20
 Identities = 31/36 (86%), Positives = 32/36 (88%)
 Frame = +3

Query: 75  LHLGSNPTEGSTRDQKLLKKQQDFSFVPSRRSENKE 182
           LHLGSNPTE S+RDQKLLKKQQD SFV SRRSE KE
Sbjct: 508 LHLGSNPTERSSRDQKLLKKQQDLSFVRSRRSEKKE 543



 Score = 49.3 bits (116), Expect(3) = 4e-20
 Identities = 24/26 (92%), Positives = 24/26 (92%)
 Frame = +2

Query: 173 K*RMVDIFKIITYLQNTVSIHPISSD 250
           K  MVDIFKIITYLQNTVSIHPISSD
Sbjct: 541 KKEMVDIFKIITYLQNTVSIHPISSD 566



 Score = 30.0 bits (66), Expect(3) = 4e-20
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 253 GCDMVPKDEPD 285
           GCDMVPKDEPD
Sbjct: 568 GCDMVPKDEPD 578


>emb|CAP11933.1| ycf2 protein [Dioscorea schimperiana]
          Length = 98

 Score = 63.2 bits (152), Expect(3) = 6e-20
 Identities = 31/36 (86%), Positives = 32/36 (88%)
 Frame = +3

Query: 75  LHLGSNPTEGSTRDQKLLKKQQDFSFVPSRRSENKE 182
           LHLGSNPTE STRDQK LKK+QD SFV SRRSENKE
Sbjct: 13  LHLGSNPTERSTRDQKFLKKKQDVSFVLSRRSENKE 48



 Score = 48.9 bits (115), Expect(3) = 6e-20
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +2

Query: 182 MVDIFKIITYLQNTVSIHPISSD 250
           MVDIFKIITYLQNTVSIHPISSD
Sbjct: 49  MVDIFKIITYLQNTVSIHPISSD 71



 Score = 30.0 bits (66), Expect(3) = 6e-20
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 253 GCDMVPKDEPD 285
           GCDMVPKDEPD
Sbjct: 73  GCDMVPKDEPD 83


>emb|CAI53855.1| ycf2 [Acorus calamus]
          Length = 2091

 Score = 62.8 bits (151), Expect(3) = 7e-20
 Identities = 30/36 (83%), Positives = 32/36 (88%)
 Frame = +3

Query: 75  LHLGSNPTEGSTRDQKLLKKQQDFSFVPSRRSENKE 182
           LH+GSNPT+ STRDQK LKKQQD SFV SRRSENKE
Sbjct: 388 LHMGSNPTDRSTRDQKWLKKQQDVSFVSSRRSENKE 423



 Score = 48.9 bits (115), Expect(3) = 7e-20
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +2

Query: 182 MVDIFKIITYLQNTVSIHPISSD 250
           MVDIFKIITYLQNTVSIHPISSD
Sbjct: 424 MVDIFKIITYLQNTVSIHPISSD 446



 Score = 30.0 bits (66), Expect(3) = 7e-20
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 253 GCDMVPKDEPD 285
           GCDMVPKDEPD
Sbjct: 448 GCDMVPKDEPD 458


>ref|YP_319807.1| Ycf2 [Acorus calamus] gi|126022805|ref|YP_319824.2| Ycf2 [Acorus
           calamus] gi|109896296|sp|Q3V4Z0.1|YCF2_ACOCL RecName:
           Full=Protein ycf2 gi|74381753|emb|CAI53838.1| ycf2
           [Acorus calamus] gi|156573627|gb|ABU85148.1|
           hypothetical protein RF2 [Acorus americanus]
          Length = 2076

 Score = 62.8 bits (151), Expect(3) = 7e-20
 Identities = 30/36 (83%), Positives = 32/36 (88%)
 Frame = +3

Query: 75  LHLGSNPTEGSTRDQKLLKKQQDFSFVPSRRSENKE 182
           LH+GSNPT+ STRDQK LKKQQD SFV SRRSENKE
Sbjct: 373 LHMGSNPTDRSTRDQKWLKKQQDVSFVSSRRSENKE 408



 Score = 48.9 bits (115), Expect(3) = 7e-20
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +2

Query: 182 MVDIFKIITYLQNTVSIHPISSD 250
           MVDIFKIITYLQNTVSIHPISSD
Sbjct: 409 MVDIFKIITYLQNTVSIHPISSD 431



 Score = 30.0 bits (66), Expect(3) = 7e-20
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 253 GCDMVPKDEPD 285
           GCDMVPKDEPD
Sbjct: 433 GCDMVPKDEPD 443