BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029390
         (584 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA95319.1| retrotransposon protein, putative, unclassified [...   142   3e-32
gb|AAP53789.1| retrotransposon protein, putative, unclassified [...   142   5e-32
emb|CAD41876.2| OSJNBa0041A02.23 [Oryza sativa Japonica Group]        140   1e-31
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]        139   2e-31
ref|NP_001053783.1| Os04g0603800 [Oryza sativa Japonica Group] g...   136   2e-30

>gb|ABA95319.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 955

 Score =  142 bits (359), Expect = 3e-32
 Identities = 73/134 (54%), Positives = 91/134 (67%), Gaps = 6/134 (4%)
 Frame = -3

Query: 570  EILYILGCSY*QTTVAIRKNLKLSARFYGPFKVLAKVGGVAYKLQLPPGSKIHPVFHVLQ 391
            +++Y+    Y Q    IR +LKL  ++YGPFKVL KVG VAY+LQLP  + IHPVFHV Q
Sbjct: 820  DMVYLKLQPYRQNAFGIRGSLKLRGKYYGPFKVLEKVGAVAYRLQLPEEAAIHPVFHVSQ 879

Query: 390  LKKKLGN------SVPMVDTEGQMLVEPVAILQRRVIPRNNKGITQVLIQWSNTLPEDAT 229
            LKK LG       ++P V  +GQ+  EPVA+LQRR+IPRNN  +TQ LI WSN  P +AT
Sbjct: 880  LKKHLGTHAVPMPNLPAVGPDGQIKTEPVAVLQRRMIPRNNVAVTQWLILWSNLTPAEAT 939

Query: 228  WDDWSYIAATFLNF 187
            W+D SYI   F NF
Sbjct: 940  WEDASYIQKVFPNF 953


>gb|AAP53789.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1611

 Score =  142 bits (357), Expect = 5e-32
 Identities = 70/134 (52%), Positives = 94/134 (70%), Gaps = 6/134 (4%)
 Frame = -3

Query: 570  EILYILGCSY*QTTVAIRKNLKLSARFYGPFKVLAKVGGVAYKLQLPPGSKIHPVFHVLQ 391
            +++Y+    Y Q  + IR +LKL +++YGPFKV+ K+G VAYKLQLP G+ IHPVFHV Q
Sbjct: 1476 DMVYLKLQPYRQVAMGIRGSLKLRSKYYGPFKVIEKMGAVAYKLQLPDGAGIHPVFHVSQ 1535

Query: 390  LKKKLG------NSVPMVDTEGQMLVEPVAILQRRVIPRNNKGITQVLIQWSNTLPEDAT 229
            LKK LG       ++P +  +GQ+  EP A+LQRR+IPR+N+ +TQ LI W N  P +AT
Sbjct: 1536 LKKHLGARAIPMPNLPAIGPDGQIKTEPAAVLQRRMIPRHNEPVTQWLILWENLTPAEAT 1595

Query: 228  WDDWSYIAATFLNF 187
            W+D SYI A F NF
Sbjct: 1596 WEDASYIQAAFPNF 1609


>emb|CAD41876.2| OSJNBa0041A02.23 [Oryza sativa Japonica Group]
          Length = 1373

 Score =  140 bits (354), Expect = 1e-31
 Identities = 68/134 (50%), Positives = 93/134 (69%), Gaps = 6/134 (4%)
 Frame = -3

Query: 570  EILYILGCSY*QTTVAIRKNLKLSARFYGPFKVLAKVGGVAYKLQLPPGSKIHPVFHVLQ 391
            +++Y+    Y Q    +R +LKL A+FYGPF++L ++G VAY LQLP  + IHPVFHV Q
Sbjct: 1238 DMVYLKMQPYRQNAFGLRGSLKLRAKFYGPFRILKRIGKVAYHLQLPEEAGIHPVFHVSQ 1297

Query: 390  LKKKLGNSV------PMVDTEGQMLVEPVAILQRRVIPRNNKGITQVLIQWSNTLPEDAT 229
            LKK +GN V      P+VD +G +  EPVA+L RRV+PR N+ +TQ L+ W N  PEDAT
Sbjct: 1298 LKKHVGNLVVPLPNLPLVDEDGNIKTEPVAVLARRVVPRRNEPVTQWLVHWENLSPEDAT 1357

Query: 228  WDDWSYIAATFLNF 187
            W+D ++I ATF +F
Sbjct: 1358 WEDSAFIQATFPHF 1371


>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]
          Length = 1586

 Score =  139 bits (349), Expect(2) = 2e-31
 Identities = 69/135 (51%), Positives = 93/135 (68%), Gaps = 6/135 (4%)
 Frame = -3

Query: 570  EILYILGCSY*QTTVAIRKNLKLSARFYGPFKVLAKVGGVAYKLQLPPGSKIHPVFHVLQ 391
            +++Y+    Y QT   IR +LKL ++FYGPFK++ KVG VAYKLQLP GS IHPVFHV Q
Sbjct: 1451 DMVYLKLQPYRQTAFGIRGSLKLRSKFYGPFKIMEKVGRVAYKLQLPEGSNIHPVFHVSQ 1510

Query: 390  LKKKLGN------SVPMVDTEGQMLVEPVAILQRRVIPRNNKGITQVLIQWSNTLPEDAT 229
            LKK +G+      ++P V  +GQ+  EPVA+L+RR+IPR    +TQ L+ W N  P +AT
Sbjct: 1511 LKKHIGSRAVPMANLPSVGPDGQIKTEPVAVLKRRMIPRGGVAVTQWLVLWHNLSPSEAT 1570

Query: 228  WDDWSYIAATFLNFN 184
            W+D S I + F +FN
Sbjct: 1571 WEDASMIQSMFPSFN 1585



 Score = 22.7 bits (47), Expect(2) = 2e-31
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 583  TFVVGDFVYLRLQ 545
            T  VGD VYL+LQ
Sbjct: 1446 TLAVGDMVYLKLQ 1458


>ref|NP_001053783.1| Os04g0603800 [Oryza sativa Japonica Group]
           gi|113565354|dbj|BAF15697.1| Os04g0603800, partial
           [Oryza sativa Japonica Group]
          Length = 123

 Score =  136 bits (343), Expect = 2e-30
 Identities = 65/118 (55%), Positives = 86/118 (72%), Gaps = 6/118 (5%)
 Frame = -3

Query: 522 IRKNLKLSARFYGPFKVLAKVGGVAYKLQLPPGSKIHPVFHVLQLKKKLGNSV------P 361
           +R +LKL A+FYGPF++L ++G VAY LQLP  + IHPVFHV QLKK +GN V      P
Sbjct: 4   LRGSLKLRAKFYGPFRILKRIGKVAYHLQLPEEAGIHPVFHVSQLKKHVGNLVVPLPNLP 63

Query: 360 MVDTEGQMLVEPVAILQRRVIPRNNKGITQVLIQWSNTLPEDATWDDWSYIAATFLNF 187
           +VD +G +  EPVA+L RRV+PR N+ +TQ L+ W N  PEDATW+D ++I ATF +F
Sbjct: 64  LVDEDGNIKTEPVAVLARRVVPRRNEPVTQWLVHWENLSPEDATWEDSAFIQATFPHF 121