BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029363
         (1224 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634850.1| PREDICTED: 50S ribosomal protein L4-like [Vi...   433   e-119
ref|XP_002518422.1| 50S ribosomal protein L4, putative [Ricinus ...   427   e-117
emb|CAN77922.1| hypothetical protein VITISV_027648 [Vitis vinifera]   423   e-116
ref|NP_565463.1| large subunit ribosomal protein L4 [Arabidopsis...   421   e-115
ref|XP_004134779.1| PREDICTED: 50S ribosomal protein L4-like [Cu...   421   e-115

>ref|XP_003634850.1| PREDICTED: 50S ribosomal protein L4-like [Vitis vinifera]
            gi|297741766|emb|CBI32995.3| unnamed protein product
            [Vitis vinifera]
          Length = 315

 Score =  433 bits (1113), Expect = e-119
 Identities = 218/287 (75%), Positives = 245/287 (85%), Gaps = 1/287 (0%)
 Frame = -1

Query: 1119 LLRSFGSLSGLNNMHRSFESRTSSSEGGVLSFFARRMFCTST-LTPQSCEGAIPQELLIK 943
            L R+  +L GL +    F + +S   G   SF + R   T+T LTP+S   A P ELL  
Sbjct: 31   LFRTSDALCGLVSQDGLFSTDSSCKTGS--SFLSSRSLSTTTILTPESSGVAFPPELLST 88

Query: 942  QSVLAPDRTQGGYEDLIIPVTNFHYEDKGFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQ 763
            ++VL P+RT G Y+DL+IPVTNFH EDKGFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQ
Sbjct: 89   KTVLTPERTPGHYQDLVIPVTNFHNEDKGFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQ 148

Query: 762  GTHSTKSISEVSGTGRKPWNQKGTGRARHGSLRGPQFRHGAVMHGPKPRSHAFKLQKKVR 583
            GTHSTK+ISEVSGTGRKPW QKGTGRARHG+LRGPQFR GA+MHGPKPRSHA KL KKVR
Sbjct: 149  GTHSTKTISEVSGTGRKPWRQKGTGRARHGTLRGPQFRGGAIMHGPKPRSHAIKLNKKVR 208

Query: 582  RLGLKVTLSARAAEGKLLIFEDLEVPTHKTKNIVNYVSQLESTKKLLVVDGGPINEKLKL 403
            RLGLK+ LSAR AEGKLL+F+DLEVP+HKTKNIVNYV ++E+TKKLL+VDGGPI EKLKL
Sbjct: 209  RLGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVNYVKEMENTKKLLLVDGGPITEKLKL 268

Query: 402  ATQNLHYVNVLPSIGLNVYSILLHDTLLMTRDAVNRIVERMHTPINR 262
            ATQNLHYVNVLPSIGLNVYSILLHDTL+M+RDAVN+IVERMHTPINR
Sbjct: 269  ATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVNKIVERMHTPINR 315


>ref|XP_002518422.1| 50S ribosomal protein L4, putative [Ricinus communis]
            gi|223542267|gb|EEF43809.1| 50S ribosomal protein L4,
            putative [Ricinus communis]
          Length = 294

 Score =  427 bits (1097), Expect = e-117
 Identities = 221/298 (74%), Positives = 250/298 (83%), Gaps = 3/298 (1%)
 Frame = -1

Query: 1146 MAVPLSRKILLRSFGSLSGLNNMHRSFESRTSSS---EGGVLSFFARRMFCTSTLTPQSC 976
            MAV +SR+IL RSF SL  L   H+SF +   SS   + G  S   R++  TS LTP S 
Sbjct: 1    MAVSISRRIL-RSFRSLPSLT--HQSFRASHESSSFIKNGAASLACRKL-STSILTPGSS 56

Query: 975  EGAIPQELLIKQSVLAPDRTQGGYEDLIIPVTNFHYEDKGFMVLAGDVFDVPIRKDIVHR 796
            + A P +LL  +++L P+R  G +EDL+IPVTNF  EDKGFMVLAGDVFDVPI+K I+HR
Sbjct: 57   DDAFPSDLLSTKTLLTPEREIGLHEDLVIPVTNFLNEDKGFMVLAGDVFDVPIKKHIIHR 116

Query: 795  VVRWQLAKRQQGTHSTKSISEVSGTGRKPWNQKGTGRARHGSLRGPQFRHGAVMHGPKPR 616
            VVRWQLAKRQQGTHSTK+ISEVSGTG+KP+ QKGTGRARHG+LRGPQFR GA MHGPKPR
Sbjct: 117  VVRWQLAKRQQGTHSTKTISEVSGTGKKPYRQKGTGRARHGTLRGPQFRGGATMHGPKPR 176

Query: 615  SHAFKLQKKVRRLGLKVTLSARAAEGKLLIFEDLEVPTHKTKNIVNYVSQLESTKKLLVV 436
            SHA K  KKVRRLGLK+ L+ARAAEGKLL+FEDLE+PTHKTKNIVNYV Q+E TKKLL+V
Sbjct: 177  SHAIKCNKKVRRLGLKIALTARAAEGKLLVFEDLEIPTHKTKNIVNYVKQMEETKKLLLV 236

Query: 435  DGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLLMTRDAVNRIVERMHTPINR 262
            DGGPINEKLKLA QNLHYVNVLPSIGLNVYSILLHDTL+M+RDAVNRIVERMHTPINR
Sbjct: 237  DGGPINEKLKLAAQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVNRIVERMHTPINR 294


>emb|CAN77922.1| hypothetical protein VITISV_027648 [Vitis vinifera]
          Length = 278

 Score =  423 bits (1088), Expect = e-116
 Identities = 218/296 (73%), Positives = 246/296 (83%), Gaps = 1/296 (0%)
 Frame = -1

Query: 1146 MAVPLSRKILLRSFGSLSGLNNMHRSFESRTSSSEGGVLSFFARRMFCTST-LTPQSCEG 970
            MAV +SR+ LL +FG             SR + S     SF + R   T+T LTP+S   
Sbjct: 1    MAVSISRR-LLXTFGP------------SRLTGS-----SFLSSRSLSTTTMLTPESSGV 42

Query: 969  AIPQELLIKQSVLAPDRTQGGYEDLIIPVTNFHYEDKGFMVLAGDVFDVPIRKDIVHRVV 790
            A P ELL  ++VL P+RT G Y+DL+IPVTNFH EDKGFM LAGDVFDVPIRKDIVHRVV
Sbjct: 43   AFPPELLSTKTVLTPERTPGHYQDLVIPVTNFHNEDKGFMXLAGDVFDVPIRKDIVHRVV 102

Query: 789  RWQLAKRQQGTHSTKSISEVSGTGRKPWNQKGTGRARHGSLRGPQFRHGAVMHGPKPRSH 610
            RWQLAKRQQGTHSTK+ISEVSGTG+KPW QKGTGRARHG+LRGPQFR GA+MHGPKPRSH
Sbjct: 103  RWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGAIMHGPKPRSH 162

Query: 609  AFKLQKKVRRLGLKVTLSARAAEGKLLIFEDLEVPTHKTKNIVNYVSQLESTKKLLVVDG 430
            A KL KKVRRLGLK+ LSAR AEGKLL+F+DLEVP+HKTKNIVNYV ++E+ KKLL+VDG
Sbjct: 163  AIKLNKKVRRLGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVNYVKEMENXKKLLLVDG 222

Query: 429  GPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLLMTRDAVNRIVERMHTPINR 262
            GPI EKLKLATQNLHYVNVLPSIGLNVYSILLHDTL+M+R+AVN+IVERMHTPINR
Sbjct: 223  GPITEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRBAVNKIVERMHTPINR 278


>ref|NP_565463.1| large subunit ribosomal protein L4 [Arabidopsis thaliana]
            gi|18252969|gb|AAL62411.1| 50S ribosomal protein L4
            [Arabidopsis thaliana] gi|20197568|gb|AAD24390.2| 50S
            ribosomal protein L4 [Arabidopsis thaliana]
            gi|25084070|gb|AAN72167.1| 50S ribosomal protein L4
            [Arabidopsis thaliana] gi|330251866|gb|AEC06960.1| large
            subunit ribosomal protein L4 [Arabidopsis thaliana]
          Length = 300

 Score =  421 bits (1083), Expect = e-115
 Identities = 212/304 (69%), Positives = 248/304 (81%), Gaps = 9/304 (2%)
 Frame = -1

Query: 1146 MAVPLSRKILLRSFGSLSGLNNMHRSFESRTSSSEGGV---------LSFFARRMFCTST 994
            MA  +SR+I  R+FGS S L        S  +S  G           ++  + R   TS 
Sbjct: 1    MAASISRRIF-RTFGSFSALGRSSSPNLSANTSGNGLASLTNDLKYGMALLSNRKLSTSI 59

Query: 993  LTPQSCEGAIPQELLIKQSVLAPDRTQGGYEDLIIPVTNFHYEDKGFMVLAGDVFDVPIR 814
            LTP   + + P +LL K++VL PDRT G Y+DL+IPVTNF  E+KGFMVLAGDVFDVPIR
Sbjct: 60   LTP---DDSFPSDLLTKKTVLTPDRTIGQYQDLVIPVTNFQNEEKGFMVLAGDVFDVPIR 116

Query: 813  KDIVHRVVRWQLAKRQQGTHSTKSISEVSGTGRKPWNQKGTGRARHGSLRGPQFRHGAVM 634
            KDI+H VVRWQLAKRQQGTHSTK++SEVSGTGRKPWNQKGTGRARHG+LRGPQFR G VM
Sbjct: 117  KDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKGTGRARHGTLRGPQFRGGCVM 176

Query: 633  HGPKPRSHAFKLQKKVRRLGLKVTLSARAAEGKLLIFEDLEVPTHKTKNIVNYVSQLEST 454
            HGPKPRSHA K+ K+VRRLGLK+ L+ARAAEGKLL+F+DL +PTHKTKNIVNY +Q+E+T
Sbjct: 177  HGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKLLVFDDLGLPTHKTKNIVNYYNQMENT 236

Query: 453  KKLLVVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLLMTRDAVNRIVERMHT 274
            KK+LVV+GGPI+EKLKLATQNLHYVN++PSIGLNVYSILLHDTLLM+RDAVN+IVERMHT
Sbjct: 237  KKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLNVYSILLHDTLLMSRDAVNKIVERMHT 296

Query: 273  PINR 262
            PINR
Sbjct: 297  PINR 300


>ref|XP_004134779.1| PREDICTED: 50S ribosomal protein L4-like [Cucumis sativus]
            gi|449531047|ref|XP_004172499.1| PREDICTED: 50S ribosomal
            protein L4-like [Cucumis sativus]
          Length = 315

 Score =  421 bits (1082), Expect = e-115
 Identities = 222/316 (70%), Positives = 251/316 (79%), Gaps = 21/316 (6%)
 Frame = -1

Query: 1146 MAVPLSRKILLRSFGSLSGLNN------MHRSFE------------SRTSSSEGGVL--- 1030
            MA+ +SR+ LLRS GSLS          M RSF             S T +S   +L   
Sbjct: 1    MAISVSRR-LLRSVGSLSTFGQCNSSCTMSRSFSNPHEIYGHVSGSSSTFASRSTLLKAG 59

Query: 1029 SFFARRMFCTSTLTPQSCEGAIPQELLIKQSVLAPDRTQGGYEDLIIPVTNFHYEDKGFM 850
            SF A R FCTS LTP+S   A P ELL  + V + +R  G Y+DL+IPVTNF  EDKGFM
Sbjct: 60   SFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDKGFM 119

Query: 849  VLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKSISEVSGTGRKPWNQKGTGRARHGS 670
            VLAGDVFD+PIRKDI+HRVVRWQLAKRQQGTHSTK+ISEVSGTGRKPW QKGTGRARHG+
Sbjct: 120  VLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRARHGT 179

Query: 669  LRGPQFRHGAVMHGPKPRSHAFKLQKKVRRLGLKVTLSARAAEGKLLIFEDLEVPTHKTK 490
            LRGPQFR GA MHGPKPRSHAFKL KKVRRLGL + LSAR AEGKLL+F++L+V THKTK
Sbjct: 180  LRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTK 239

Query: 489  NIVNYVSQLESTKKLLVVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLLMTR 310
            N+V YVS++E+TKK+L+VDGGPI+EKLKLATQNLHYVNVLPSIGLNVYSILLHDTL+M+R
Sbjct: 240  NMVKYVSKMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSR 299

Query: 309  DAVNRIVERMHTPINR 262
            DAV RIV RMHTPINR
Sbjct: 300  DAVERIVTRMHTPINR 315