BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029331
         (473 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21248.3| unnamed protein product [Vitis vinifera]              283   8e-75
ref|XP_002276313.1| PREDICTED: transcription-repair-coupling fac...   283   8e-75
ref|NP_566160.1| putative DEAD/DEAH box helicase [Arabidopsis th...   279   2e-73
ref|NP_001078092.1| putative DEAD/DEAH box helicase [Arabidopsis...   279   2e-73
ref|XP_002320427.1| predicted protein [Populus trichocarpa] gi|2...   277   7e-73

>emb|CBI21248.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  283 bits (725), Expect = 8e-75
 Identities = 138/157 (87%), Positives = 150/157 (95%)
 Frame = +2

Query: 2   PNESKRPRTLSKLSDTSVWEKRRIKGKIAIQKMVVDLMELYLHRLKQKRPPYPKTTAMAE 181
           P+ESKRPRTLSKLSDTS+WE+RRIKG++AIQKMVVDLMELYLHRLKQKRPPYPK+  MAE
Sbjct: 19  PSESKRPRTLSKLSDTSIWERRRIKGRVAIQKMVVDLMELYLHRLKQKRPPYPKSPGMAE 78

Query: 182 FAAEFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFSVVSTSKQ 361
           F A+F YEPTPDQKQAFIDVE+DLTERETPMDRLICGDVGFGKTEVALRAIF VVS  KQ
Sbjct: 79  FEAQFSYEPTPDQKQAFIDVEEDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 138

Query: 362 AMVLAPTIVLAKQHFDVVSERFSQYPHIKVGLLSRFQ 472
           AMVLAPTIVLAKQHFDV++ERFS+YP+IKVGLLSRFQ
Sbjct: 139 AMVLAPTIVLAKQHFDVITERFSKYPNIKVGLLSRFQ 175


>ref|XP_002276313.1| PREDICTED: transcription-repair-coupling factor-like [Vitis
           vinifera]
          Length = 823

 Score =  283 bits (725), Expect = 8e-75
 Identities = 138/157 (87%), Positives = 150/157 (95%)
 Frame = +2

Query: 2   PNESKRPRTLSKLSDTSVWEKRRIKGKIAIQKMVVDLMELYLHRLKQKRPPYPKTTAMAE 181
           P+ESKRPRTLSKLSDTS+WE+RRIKG++AIQKMVVDLMELYLHRLKQKRPPYPK+  MAE
Sbjct: 202 PSESKRPRTLSKLSDTSIWERRRIKGRVAIQKMVVDLMELYLHRLKQKRPPYPKSPGMAE 261

Query: 182 FAAEFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFSVVSTSKQ 361
           F A+F YEPTPDQKQAFIDVE+DLTERETPMDRLICGDVGFGKTEVALRAIF VVS  KQ
Sbjct: 262 FEAQFSYEPTPDQKQAFIDVEEDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 321

Query: 362 AMVLAPTIVLAKQHFDVVSERFSQYPHIKVGLLSRFQ 472
           AMVLAPTIVLAKQHFDV++ERFS+YP+IKVGLLSRFQ
Sbjct: 322 AMVLAPTIVLAKQHFDVITERFSKYPNIKVGLLSRFQ 358


>ref|NP_566160.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
           gi|332640233|gb|AEE73754.1| putative DEAD/DEAH box
           helicase [Arabidopsis thaliana]
          Length = 823

 Score =  279 bits (713), Expect = 2e-73
 Identities = 136/157 (86%), Positives = 147/157 (93%)
 Frame = +2

Query: 2   PNESKRPRTLSKLSDTSVWEKRRIKGKIAIQKMVVDLMELYLHRLKQKRPPYPKTTAMAE 181
           PNE+KRPRTLS+LSDTSVWE+R+ KGK+AIQKMVVDLMELYLHRL+QKR PYPK   MA+
Sbjct: 202 PNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQKRYPYPKNPIMAD 261

Query: 182 FAAEFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFSVVSTSKQ 361
           FAA+FPY  TPDQKQAF+DVEKDLTERETPMDRLICGDVGFGKTEVALRAIF VVST KQ
Sbjct: 262 FAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQ 321

Query: 362 AMVLAPTIVLAKQHFDVVSERFSQYPHIKVGLLSRFQ 472
           AMVLAPTIVLAKQH+DV+SERFS YPHIKVGLLSRFQ
Sbjct: 322 AMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQ 358


>ref|NP_001078092.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
           gi|6513947|gb|AAF14851.1|AC011664_33 putative helicase
           [Arabidopsis thaliana] gi|332640234|gb|AEE73755.1|
           putative DEAD/DEAH box helicase [Arabidopsis thaliana]
          Length = 822

 Score =  279 bits (713), Expect = 2e-73
 Identities = 136/157 (86%), Positives = 147/157 (93%)
 Frame = +2

Query: 2   PNESKRPRTLSKLSDTSVWEKRRIKGKIAIQKMVVDLMELYLHRLKQKRPPYPKTTAMAE 181
           PNE+KRPRTLS+LSDTSVWE+R+ KGK+AIQKMVVDLMELYLHRL+QKR PYPK   MA+
Sbjct: 201 PNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQKRYPYPKNPIMAD 260

Query: 182 FAAEFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFSVVSTSKQ 361
           FAA+FPY  TPDQKQAF+DVEKDLTERETPMDRLICGDVGFGKTEVALRAIF VVST KQ
Sbjct: 261 FAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQ 320

Query: 362 AMVLAPTIVLAKQHFDVVSERFSQYPHIKVGLLSRFQ 472
           AMVLAPTIVLAKQH+DV+SERFS YPHIKVGLLSRFQ
Sbjct: 321 AMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQ 357


>ref|XP_002320427.1| predicted protein [Populus trichocarpa] gi|222861200|gb|EEE98742.1|
           predicted protein [Populus trichocarpa]
          Length = 817

 Score =  277 bits (708), Expect = 7e-73
 Identities = 134/157 (85%), Positives = 145/157 (92%)
 Frame = +2

Query: 2   PNESKRPRTLSKLSDTSVWEKRRIKGKIAIQKMVVDLMELYLHRLKQKRPPYPKTTAMAE 181
           PNE+KRPRTLSKLSDT  WE+R+ KGK+AIQKMVVDLMELYLHRLKQ+RPPYPKT  MAE
Sbjct: 196 PNETKRPRTLSKLSDTGAWERRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKTPFMAE 255

Query: 182 FAAEFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFSVVSTSKQ 361
           FAA+FPYEPTPDQK AFIDVE+DL +RETPMDRLICGDVGFGKTEVALRAIF +VS  KQ
Sbjct: 256 FAAQFPYEPTPDQKLAFIDVERDLNQRETPMDRLICGDVGFGKTEVALRAIFCIVSAGKQ 315

Query: 362 AMVLAPTIVLAKQHFDVVSERFSQYPHIKVGLLSRFQ 472
           AMVLAPTIVLAKQHFDV+SERFS+Y HIKV LLSRFQ
Sbjct: 316 AMVLAPTIVLAKQHFDVISERFSKYSHIKVALLSRFQ 352