BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029318
         (396 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat...   140   1e-31
ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat...   140   1e-31
ref|XP_002310039.1| predicted protein [Populus trichocarpa] gi|2...   135   5e-30
ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat...   127   7e-28
ref|XP_002515231.1| pentatricopeptide repeat-containing protein,...   127   7e-28

>ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  140 bits (352), Expect = 1e-31
 Identities = 72/129 (55%), Positives = 97/129 (75%), Gaps = 2/129 (1%)
 Frame = +1

Query: 16  MILLKSYFVQSP-KICNPQTFNSI-THFFSTLDTPKNEEEKNIETIFHIVNSSESTQNLK 189
           MIL +  F QSP +  +P   +   +H FS+  T      +NIET+F I+ +S S+ ++K
Sbjct: 1   MILRRPNFFQSPLRYFSPIPLSIFYSHPFSS-STDNQSLHQNIETVFRIITTSSSSTDMK 59

Query: 190 DSLKSTQIYLSNSLIDGVLKRVRFSHANPLQALDFFNYTAKKSEFFHTSYSYDTLLYILG 369
            SL+S++++LSN LIDGVLKRVRFSH NPLQAL+FFNYTAK+  F+HTS+S DT+LYILG
Sbjct: 60  HSLESSRVFLSNELIDGVLKRVRFSHGNPLQALEFFNYTAKRRGFYHTSFSVDTMLYILG 119

Query: 370 RNRKFDKMW 396
           R+RKFDK+W
Sbjct: 120 RSRKFDKIW 128


>ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  140 bits (352), Expect = 1e-31
 Identities = 72/129 (55%), Positives = 97/129 (75%), Gaps = 2/129 (1%)
 Frame = +1

Query: 16  MILLKSYFVQSP-KICNPQTFNSI-THFFSTLDTPKNEEEKNIETIFHIVNSSESTQNLK 189
           MIL +  F QSP +  +P   +   +H FS+  T      +NIET+F I+ +S S+ ++K
Sbjct: 1   MILRRPNFFQSPLRYFSPIPLSIFFSHPFSS-STDNQSLHQNIETVFRIITTSSSSTDMK 59

Query: 190 DSLKSTQIYLSNSLIDGVLKRVRFSHANPLQALDFFNYTAKKSEFFHTSYSYDTLLYILG 369
            SL+S++++LSN LIDGVLKRVRFSH NPLQAL+FFNYTAK+  F+HTS+S DT+LYILG
Sbjct: 60  HSLESSRVFLSNELIDGVLKRVRFSHGNPLQALEFFNYTAKRRGFYHTSFSVDTMLYILG 119

Query: 370 RNRKFDKMW 396
           R+RKFDK+W
Sbjct: 120 RSRKFDKIW 128


>ref|XP_002310039.1| predicted protein [Populus trichocarpa] gi|222852942|gb|EEE90489.1|
           predicted protein [Populus trichocarpa]
          Length = 507

 Score =  135 bits (339), Expect = 5e-30
 Identities = 72/134 (53%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
 Frame = +1

Query: 1   VKKRKMILLKSYFVQSPKICNPQTFNSITHFFSTLDTPKNEEEKNIET--IFHIVNSSES 174
           +K     L KS +V S KI           F S    P+N   K+I+   I++I+++S S
Sbjct: 6   LKSLSFELQKSRYVSSSKI----------PFLSLHTNPQNHNNKDIQVDAIYNIISNSTS 55

Query: 175 TQNLKDSLKSTQIYLSNSLIDGVLKRVRFSHANPLQALDFFNYTAKKSEFFHTSYSYDTL 354
           +QNLK SLKST ++LSN LID VLKRVRFSH NPLQALDFFN+TA +  F+H+SYS DT+
Sbjct: 56  SQNLKQSLKSTGVFLSNDLIDKVLKRVRFSHGNPLQALDFFNFTADRRGFYHSSYSLDTM 115

Query: 355 LYILGRNRKFDKMW 396
           LYILGR+RKFD +W
Sbjct: 116 LYILGRSRKFDHIW 129


>ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score =  127 bits (320), Expect = 7e-28
 Identities = 62/114 (54%), Positives = 84/114 (73%), Gaps = 2/114 (1%)
 Frame = +1

Query: 61  NPQTFNSITH--FFSTLDTPKNEEEKNIETIFHIVNSSESTQNLKDSLKSTQIYLSNSLI 234
           NPQ  +S+    ++S        +  ++ET+F IV+S+ ST+NLK SLKS+ ++LSN LI
Sbjct: 33  NPQNPSSVFSRLYWSETIAETTVDNGDVETVFRIVSSASSTRNLKQSLKSSGVFLSNDLI 92

Query: 235 DGVLKRVRFSHANPLQALDFFNYTAKKSEFFHTSYSYDTLLYILGRNRKFDKMW 396
           D VLKRVRFSH NP QAL FFNYT K+  F+HT +S DT+LYILGR+R+FD++W
Sbjct: 93  DKVLKRVRFSHGNPFQALAFFNYTNKRKGFYHTPFSLDTMLYILGRSRRFDQIW 146


>ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545711|gb|EEF47215.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 505

 Score =  127 bits (320), Expect = 7e-28
 Identities = 63/102 (61%), Positives = 76/102 (74%)
 Frame = +1

Query: 91  FFSTLDTPKNEEEKNIETIFHIVNSSESTQNLKDSLKSTQIYLSNSLIDGVLKRVRFSHA 270
           FFST  T  N++   +E ++ I+ SS S QNLK SL ST I+LSN LID VLKRVRFSH 
Sbjct: 27  FFSTNPTSLNDD---VEVVYRIITSSSSVQNLKQSLTSTGIFLSNDLIDKVLKRVRFSHG 83

Query: 271 NPLQALDFFNYTAKKSEFFHTSYSYDTLLYILGRNRKFDKMW 396
           NPLQAL+FF YT  +  F+HT YS DT+LYILGR+RKFD +W
Sbjct: 84  NPLQALEFFYYTDNRKGFYHTPYSLDTILYILGRSRKFDHIW 125