BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029292
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containi...   125   5e-27
ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21
ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   104   8e-21
ref|XP_002525211.1| pentatricopeptide repeat-containing protein,...   103   2e-20
ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containi...   102   4e-20

>ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  125 bits (313), Expect = 5e-27
 Identities = 56/82 (68%), Positives = 68/82 (82%)
 Frame = +1

Query: 58  LDCRACGHLLQHCTNHRLINQGKQIHAHIILNPLTPDNFLASKLVTFYSKTGHLYESRKV 237
           LD  A G L+QHC++HRL+ Q KQ+HA I+L+ LTPDNFLASKL+TFYSK+ HLYE+ KV
Sbjct: 32  LDYGAFGRLIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKV 91

Query: 238 FDDIPEKNIFSWNAMFIAYSLH 303
           FD I +KNIFSWNAM I YS+H
Sbjct: 92  FDKILDKNIFSWNAMLIGYSIH 113


>ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score =  107 bits (267), Expect = 1e-21
 Identities = 47/82 (57%), Positives = 62/82 (75%)
 Frame = +1

Query: 58  LDCRACGHLLQHCTNHRLINQGKQIHAHIILNPLTPDNFLASKLVTFYSKTGHLYESRKV 237
           +D  A G  LQHC++HRL+ QGKQ+HA +IL  +TPDNFLASKL+ FYSK+ H + +RKV
Sbjct: 32  VDFAAYGSALQHCSDHRLLRQGKQLHARLILLSVTPDNFLASKLILFYSKSNHAHFARKV 91

Query: 238 FDDIPEKNIFSWNAMFIAYSLH 303
           FD  P +N F+WNAM + YS +
Sbjct: 92  FDTTPHRNTFTWNAMLLGYSFN 113


>ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  104 bits (259), Expect = 8e-21
 Identities = 44/78 (56%), Positives = 60/78 (76%)
 Frame = +1

Query: 70  ACGHLLQHCTNHRLINQGKQIHAHIILNPLTPDNFLASKLVTFYSKTGHLYESRKVFDDI 249
           A G L+QHCT+H     GKQ+HA ++L+ + PDNFL SKL++FYSK+G + ++  VF  I
Sbjct: 5   AYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKI 64

Query: 250 PEKNIFSWNAMFIAYSLH 303
           P KNIFSWNA+FI+Y+LH
Sbjct: 65  PRKNIFSWNALFISYTLH 82


>ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535508|gb|EEF37177.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 654

 Score =  103 bits (256), Expect = 2e-20
 Identities = 51/82 (62%), Positives = 59/82 (71%)
 Frame = +1

Query: 58  LDCRACGHLLQHCTNHRLINQGKQIHAHIILNPLTPDNFLASKLVTFYSKTGHLYESRKV 237
           LDC   GHLL H T  RL  Q KQ+HA +IL  +TP+N+LASKLV  YSKT HL  +R V
Sbjct: 22  LDCGIYGHLLHHLTELRLPLQAKQLHARLILFSVTPENYLASKLVALYSKTNHLAFARYV 81

Query: 238 FDDIPEKNIFSWNAMFIAYSLH 303
           FD IP KN FS+NAM I+YSLH
Sbjct: 82  FDQIPHKNTFSYNAMLISYSLH 103


>ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  102 bits (253), Expect = 4e-20
 Identities = 43/78 (55%), Positives = 59/78 (75%)
 Frame = +1

Query: 70  ACGHLLQHCTNHRLINQGKQIHAHIILNPLTPDNFLASKLVTFYSKTGHLYESRKVFDDI 249
           A G L+QHCT+H     GKQ+HA ++L+ + PDNFL SKL++FYSK+G + ++  VF  I
Sbjct: 5   AYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKI 64

Query: 250 PEKNIFSWNAMFIAYSLH 303
           P KNIFSWNA+ I+Y+LH
Sbjct: 65  PRKNIFSWNALLISYTLH 82



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 25/58 (43%), Positives = 38/58 (65%)
 Frame = +1

Query: 124 KQIHAHIILNPLTPDNFLASKLVTFYSKTGHLYESRKVFDDIPEKNIFSWNAMFIAYS 297
           K++H+ I+   L  D F+ + L+TFYS+   L  +R +FD +PE++I SWNAM   YS
Sbjct: 128 KEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYS 185