BLASTX nr result

ID: Coptis25_contig00029222 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029222
         (587 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002891017.1| hypothetical protein ARALYDRAFT_473474 [Arab...    68   1e-09
gb|ABK28071.1| unknown [Arabidopsis thaliana]                          66   4e-09
ref|NP_001031132.1| uncharacterized protein [Arabidopsis thalian...    66   4e-09
ref|XP_002298970.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08
ref|XP_002298969.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08

>ref|XP_002891017.1| hypothetical protein ARALYDRAFT_473474 [Arabidopsis lyrata subsp.
           lyrata] gi|297336859|gb|EFH67276.1| hypothetical protein
           ARALYDRAFT_473474 [Arabidopsis lyrata subsp. lyrata]
          Length = 82

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 39/86 (45%), Positives = 52/86 (60%)
 Frame = +2

Query: 296 MMSLFSSFDALCAEYLGQKVGCGSSLIMSSTIVKKEVKNMGQKQKETSISTPSTQVNSKS 475
           M S+FS+FDA+CAE +G+KV   S +  S    +    + G  Q   S+S  + +  SK+
Sbjct: 1   MNSMFSAFDAMCAEIMGKKVTAASYVYRSE---RNSASSSGGGQN-ASLSLKNDEKASKN 56

Query: 476 QKKQHTTPRFAIELDGLNCFETIVSS 553
                 TPRFA+ELDGLNCFETIV S
Sbjct: 57  MDLPTKTPRFALELDGLNCFETIVRS 82


>gb|ABK28071.1| unknown [Arabidopsis thaliana]
          Length = 85

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 37/86 (43%), Positives = 51/86 (59%)
 Frame = +2

Query: 296 MMSLFSSFDALCAEYLGQKVGCGSSLIMSSTIVKKEVKNMGQKQKETSISTPSTQVNSKS 475
           M S+FS+FDA+CAE +G+KV   S +  S         ++G +    S+S    +  SK+
Sbjct: 1   MNSMFSAFDAMCAEIMGKKVTAASYVYRSERNSASSSSSVGGQN--ASLSLKKDEKASKN 58

Query: 476 QKKQHTTPRFAIELDGLNCFETIVSS 553
                 TPRFA+ELDGL+CFETIV S
Sbjct: 59  MDLPTKTPRFALELDGLHCFETIVRS 84


>ref|NP_001031132.1| uncharacterized protein [Arabidopsis thaliana]
           gi|62320897|dbj|BAD93886.1| hypothetical protein
           [Arabidopsis thaliana] gi|98962165|gb|ABF59412.1|
           unknown protein [Arabidopsis thaliana]
           gi|332193419|gb|AEE31540.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 84

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 37/86 (43%), Positives = 51/86 (59%)
 Frame = +2

Query: 296 MMSLFSSFDALCAEYLGQKVGCGSSLIMSSTIVKKEVKNMGQKQKETSISTPSTQVNSKS 475
           M S+FS+FDA+CAE +G+KV   S +  S         ++G +    S+S    +  SK+
Sbjct: 1   MNSMFSAFDAMCAEIMGKKVTAASYVYRSERNSASSSSSVGGQN--ASLSLKKDEKASKN 58

Query: 476 QKKQHTTPRFAIELDGLNCFETIVSS 553
                 TPRFA+ELDGL+CFETIV S
Sbjct: 59  MDLPTKTPRFALELDGLHCFETIVRS 84


>ref|XP_002298970.1| predicted protein [Populus trichocarpa] gi|222846228|gb|EEE83775.1|
           predicted protein [Populus trichocarpa]
          Length = 89

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
 Frame = +2

Query: 296 MMSLFSSFDALCAEYLGQKVGCGSSLIMSSTIVKKEVK---NMGQKQKETSISTPSTQVN 466
           M S+FSSFDALCAE LGQKV    +L       K+ +    N    + +   +   +   
Sbjct: 1   MNSMFSSFDALCAELLGQKVRSSLALTTMDCNTKRVLTAGDNSEVGEDKLIKNREGSSSR 60

Query: 467 SKSQKKQHTTPRFAIELDGLNCFETIVS 550
           S ++K++   PRFA ELDGLNCFETIV+
Sbjct: 61  SLARKQEKKVPRFAPELDGLNCFETIVN 88


>ref|XP_002298969.1| predicted protein [Populus trichocarpa]
           gi|224147080|ref|XP_002336403.1| predicted protein
           [Populus trichocarpa] gi|222834911|gb|EEE73360.1|
           predicted protein [Populus trichocarpa]
           gi|222846227|gb|EEE83774.1| predicted protein [Populus
           trichocarpa]
          Length = 89

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
 Frame = +2

Query: 296 MMSLFSSFDALCAEYLGQKVGCGSSLIMSSTIVKKEVK---NMGQKQKETSISTPSTQVN 466
           M S+FSSFDALCAE LGQKV    +L       K+ +    N    + +   +   +   
Sbjct: 1   MNSMFSSFDALCAELLGQKVRSSLALTTMDCNTKRVLTAGDNSMVAEDKLIKNREGSSSR 60

Query: 467 SKSQKKQHTTPRFAIELDGLNCFETIVS 550
           S ++K++   PRFA ELDGLNCFETIV+
Sbjct: 61  SLARKQEKKVPRFAPELDGLNCFETIVN 88


Top