BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029198
         (386 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containi...    89   2e-25
emb|CBI22025.3| unnamed protein product [Vitis vinifera]               89   2e-25
ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containi...    76   1e-20
ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containi...    76   9e-20
dbj|BAJ92110.1| predicted protein [Hordeum vulgare subsp. vulgare]     58   2e-12

>ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score = 89.0 bits (219), Expect(2) = 2e-25
 Identities = 36/59 (61%), Positives = 49/59 (83%)
 Frame = +2

Query: 197 HSMVITSGCCLEKFVMNHLINMYCKCEDLESGITLFSVLPRKNVMSCNILIGGFVQNGD 373
           HS++ITSGC  +KF+ NHL+N+Y KC  L++ ITLF V+PRKN+MSCNILI G+ ++GD
Sbjct: 75  HSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGD 133



 Score = 51.6 bits (122), Expect(2) = 2e-25
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = +3

Query: 81  ELINLCSKVYLKQAFKQYYNEIWLDPNLFSHLIKGCI 191
           E  NLCSK +LKQAF ++ + IW +P+LFSHL++ CI
Sbjct: 27  EFTNLCSKGHLKQAFDRFSSHIWSEPSLFSHLLQSCI 63


>emb|CBI22025.3| unnamed protein product [Vitis vinifera]
          Length = 489

 Score = 89.0 bits (219), Expect(2) = 2e-25
 Identities = 36/59 (61%), Positives = 49/59 (83%)
 Frame = +2

Query: 197 HSMVITSGCCLEKFVMNHLINMYCKCEDLESGITLFSVLPRKNVMSCNILIGGFVQNGD 373
           HS++ITSGC  +KF+ NHL+N+Y KC  L++ ITLF V+PRKN+MSCNILI G+ ++GD
Sbjct: 75  HSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGD 133



 Score = 51.6 bits (122), Expect(2) = 2e-25
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = +3

Query: 81  ELINLCSKVYLKQAFKQYYNEIWLDPNLFSHLIKGCI 191
           E  NLCSK +LKQAF ++ + IW +P+LFSHL++ CI
Sbjct: 27  EFTNLCSKGHLKQAFDRFSSHIWSEPSLFSHLLQSCI 63


>ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score = 75.9 bits (185), Expect(2) = 1e-20
 Identities = 30/63 (47%), Positives = 48/63 (76%)
 Frame = +2

Query: 197 HSMVITSGCCLEKFVMNHLINMYCKCEDLESGITLFSVLPRKNVMSCNILIGGFVQNGDL 376
           HS++ TSGC  +KF+ NHL+N+Y K  +L++ + LF  +PR+N+MSCNI+I  ++  G+L
Sbjct: 92  HSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNL 151

Query: 377 DSA 385
           +SA
Sbjct: 152 ESA 154



 Score = 48.5 bits (114), Expect(2) = 1e-20
 Identities = 17/39 (43%), Positives = 30/39 (76%)
 Frame = +3

Query: 78  DELINLCSKVYLKQAFKQYYNEIWLDPNLFSHLIKGCIP 194
           ++   LCSK ++++AF+ + +EIW +P LFS+L++ CIP
Sbjct: 43  EQFATLCSKGHIREAFESFLSEIWAEPRLFSNLLQACIP 81


>ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
           gi|449526872|ref|XP_004170437.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score = 76.3 bits (186), Expect(2) = 9e-20
 Identities = 35/63 (55%), Positives = 47/63 (74%)
 Frame = +2

Query: 197 HSMVITSGCCLEKFVMNHLINMYCKCEDLESGITLFSVLPRKNVMSCNILIGGFVQNGDL 376
           HS++ITSG   +KF+ NHL+N Y K    +S + LFS +PR+NVMS NILI G++Q GDL
Sbjct: 85  HSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDL 144

Query: 377 DSA 385
           +SA
Sbjct: 145 ESA 147



 Score = 45.4 bits (106), Expect(2) = 9e-20
 Identities = 18/37 (48%), Positives = 27/37 (72%)
 Frame = +3

Query: 81  ELINLCSKVYLKQAFKQYYNEIWLDPNLFSHLIKGCI 191
           E  +LC+   +KQA+  + +EIW DP+LFSHL++ CI
Sbjct: 37  EFTSLCNDGRIKQAYDTFTSEIWSDPSLFSHLLQSCI 73


>dbj|BAJ92110.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 503

 Score = 57.8 bits (138), Expect(2) = 2e-12
 Identities = 27/67 (40%), Positives = 40/67 (59%)
 Frame = +2

Query: 185 MYTKHSMVITSGCCLEKFVMNHLINMYCKCEDLESGITLFSVLPRKNVMSCNILIGGFVQ 364
           ++  H+   TSG   ++F  N+L+  Y    DL +   LF  +P+ NVMS NILIGG+++
Sbjct: 61  LHQLHAFAATSGAAADRFTTNNLMLAYADLGDLPTACRLFERIPKPNVMSWNILIGGYIK 120

Query: 365 NGDLDSA 385
           N  L SA
Sbjct: 121 NSHLGSA 127



 Score = 38.9 bits (89), Expect(2) = 2e-12
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 75  KDELINLCSKVYLKQAFKQYYNEI-WLDPNLFSHLIKGC 188
           K E I LCS   LK A    + ++ W DPNLF+H+ + C
Sbjct: 17  KGEFIRLCSSGRLKDALHHPFRDVLWSDPNLFAHVFRAC 55