BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029190
         (514 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   213   1e-53
ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|2...   204   6e-51
ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [...   194   6e-48
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   194   8e-48
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   194   8e-48

>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
           vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
           product [Vitis vinifera]
          Length = 433

 Score =  213 bits (542), Expect = 1e-53
 Identities = 114/166 (68%), Positives = 129/166 (77%), Gaps = 9/166 (5%)
 Frame = -3

Query: 473 SSAKALRIKKTTKPTLGLLRIF-----SSQEPVTG--GESGNYAGVQLQETVE--NNGSS 321
           +S  AL   +  K    + RI      S+ EP+    G   NYAGV+L+ETV   N+ S 
Sbjct: 16  TSQSALLFPRNPKSCSRVFRILRACSNSTDEPLVSVSGRRTNYAGVRLEETVVDVNSDSG 75

Query: 320 KARIDSWISSRISNVSRARVQSSIRAGLVTVNGRIIDKVSHVIRGGDKVNCTISELQPLR 141
           K R+DSWISSRI  +SRARVQSSIR+GLV+VN RI+DKVSHVIR GDKVNCTISELQPLR
Sbjct: 76  KLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSHVIRAGDKVNCTISELQPLR 135

Query: 140 AEPEDIPLDIVFEDAHVLVVNKPAHMVVHPAPGNANGTLVNGILHH 3
           AEPEDIPLDIV+ED HVLVVNKPAHMVVHPAPGNA+GTLVNGILHH
Sbjct: 136 AEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHH 181


>ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|222843675|gb|EEE81222.1|
           predicted protein [Populus trichocarpa]
          Length = 444

 Score =  204 bits (519), Expect = 6e-51
 Identities = 109/176 (61%), Positives = 139/176 (78%), Gaps = 6/176 (3%)
 Frame = -3

Query: 512 KKKKMFALTCSPSSSAKALRIKKTTKPTLG-LLRIFSS--QEPVTGGESG---NYAGVQL 351
           + K+M +++     SA +  + +  KPT   LL + SS  +EP +    G   NY+GV+L
Sbjct: 26  RSKRMLSISSVSRCSAPSFFLSQ--KPTASRLLTVHSSSTREPNSNQNPGQRINYSGVKL 83

Query: 350 QETVENNGSSKARIDSWISSRISNVSRARVQSSIRAGLVTVNGRIIDKVSHVIRGGDKVN 171
           +E+V++  S K+R+DSWISSRIS +SRARVQSSI++GLV+VNG++IDKVSH ++ GDKVN
Sbjct: 84  EESVDSK-SGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSHNVKAGDKVN 142

Query: 170 CTISELQPLRAEPEDIPLDIVFEDAHVLVVNKPAHMVVHPAPGNANGTLVNGILHH 3
           C ISELQPLRAEPE+IPLDIV+ED +VLVVNKPAHMVVHPAPGNA GTLVNGILHH
Sbjct: 143 CVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNGILHH 198


>ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223541437|gb|EEF42987.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 399

 Score =  194 bits (493), Expect = 6e-48
 Identities = 104/168 (61%), Positives = 126/168 (75%), Gaps = 7/168 (4%)
 Frame = -3

Query: 485 CSPSSSAKALRIKKTTKPTL-----GLLRIFSSQEPVTGGESGNYAGVQLQETVE--NNG 327
           C  SSS+ +L    T    L      L RIF+ +   +     NY G++L+ETV+  +  
Sbjct: 12  CIQSSSSLSLPFFSTNPRRLFPCNISLSRIFTIR---SCQNHTNYGGIRLEETVQVVHAK 68

Query: 326 SSKARIDSWISSRISNVSRARVQSSIRAGLVTVNGRIIDKVSHVIRGGDKVNCTISELQP 147
           S K R+DSWISSRIS +SRARVQSSI++GLV+VNGR++DKVSH ++ GDKV CTISELQP
Sbjct: 69  SVKLRLDSWISSRISGISRARVQSSIKSGLVSVNGRVVDKVSHNVKFGDKVTCTISELQP 128

Query: 146 LRAEPEDIPLDIVFEDAHVLVVNKPAHMVVHPAPGNANGTLVNGILHH 3
           LRAEPED+PLDIV+ED H+LVVNKP HMVVHPAPGN  GTLVNGILHH
Sbjct: 129 LRAEPEDMPLDIVYEDEHLLVVNKPPHMVVHPAPGNPTGTLVNGILHH 176


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
           chloroplastic-like [Cucumis sativus]
          Length = 452

 Score =  194 bits (492), Expect = 8e-48
 Identities = 95/123 (77%), Positives = 108/123 (87%)
 Frame = -3

Query: 371 NYAGVQLQETVENNGSSKARIDSWISSRISNVSRARVQSSIRAGLVTVNGRIIDKVSHVI 192
           NYAG +L+ETV+ N   K R+DSWIS RI+ +SRARVQSSIRAGLV+VNGR+IDKVSH +
Sbjct: 60  NYAGTRLEETVDVN-PGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNV 118

Query: 191 RGGDKVNCTISELQPLRAEPEDIPLDIVFEDAHVLVVNKPAHMVVHPAPGNANGTLVNGI 12
           + GD +NCTISELQPLRAEPEDI LDIV+ED HVLVVNKPAHMVVHPAPGNA GTLVN I
Sbjct: 119 KAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAI 178

Query: 11  LHH 3
           L+H
Sbjct: 179 LNH 181


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
           sativus]
          Length = 453

 Score =  194 bits (492), Expect = 8e-48
 Identities = 95/123 (77%), Positives = 108/123 (87%)
 Frame = -3

Query: 371 NYAGVQLQETVENNGSSKARIDSWISSRISNVSRARVQSSIRAGLVTVNGRIIDKVSHVI 192
           NYAG +L+ETV+ N   K R+DSWIS RI+ +SRARVQSSIRAGLV+VNGR+IDKVSH +
Sbjct: 60  NYAGTRLEETVDVN-PGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNV 118

Query: 191 RGGDKVNCTISELQPLRAEPEDIPLDIVFEDAHVLVVNKPAHMVVHPAPGNANGTLVNGI 12
           + GD +NCTISELQPLRAEPEDI LDIV+ED HVLVVNKPAHMVVHPAPGNA GTLVN I
Sbjct: 119 KAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAI 178

Query: 11  LHH 3
           L+H
Sbjct: 179 LNH 181