BLASTX nr result

ID: Coptis25_contig00029160 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029160
         (369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004162388.1| PREDICTED: LOW QUALITY PROTEIN: probable rec...   162   3e-38
ref|XP_004140603.1| PREDICTED: probable receptor protein kinase ...   162   3e-38
ref|XP_003552433.1| PREDICTED: probable receptor protein kinase ...   161   5e-38
ref|XP_003552432.1| PREDICTED: probable receptor protein kinase ...   161   5e-38
ref|XP_003537524.1| PREDICTED: probable receptor protein kinase ...   159   3e-37

>ref|XP_004162388.1| PREDICTED: LOW QUALITY PROTEIN: probable receptor protein kinase
           TMK1-like [Cucumis sativus]
          Length = 930

 Score =  162 bits (409), Expect = 3e-38
 Identities = 79/123 (64%), Positives = 91/123 (73%)
 Frame = -1

Query: 369 VNLSASNVNMMGSLPDIFGKFLSLQSVRLSYNNLTGVLPSSFNGTGVQNLWLNNQMXXXX 190
           V+L A N N++GSLPD F  F SLQ +RLSYNNLTGVLP S  G+G+++LWLNNQ+    
Sbjct: 162 VSLYAGNANIVGSLPDFFDSFASLQELRLSYNNLTGVLPKSLGGSGIKSLWLNNQLNGLS 221

Query: 189 XXXXXXGTMAQLSQVWLQKNSFTGPIPDLSKCVNLFDLQLRDNQLTGMVPPSLMSMLQLR 10
                  +M QLSQVWLQKN FTG IPD SKC  LFDLQLRDNQ TG+VPPSLMS+  L 
Sbjct: 222 GSIDLLSSMTQLSQVWLQKNQFTGQIPDFSKCEGLFDLQLRDNQFTGIVPPSLMSLSSLL 281

Query: 9   NVS 1
           NVS
Sbjct: 282 NVS 284


>ref|XP_004140603.1| PREDICTED: probable receptor protein kinase TMK1-like [Cucumis
           sativus]
          Length = 930

 Score =  162 bits (409), Expect = 3e-38
 Identities = 79/123 (64%), Positives = 91/123 (73%)
 Frame = -1

Query: 369 VNLSASNVNMMGSLPDIFGKFLSLQSVRLSYNNLTGVLPSSFNGTGVQNLWLNNQMXXXX 190
           V+L A N N++GSLPD F  F SLQ +RLSYNNLTGVLP S  G+G+++LWLNNQ+    
Sbjct: 162 VSLYAGNANIVGSLPDFFDSFASLQELRLSYNNLTGVLPKSLGGSGIKSLWLNNQLNGLS 221

Query: 189 XXXXXXGTMAQLSQVWLQKNSFTGPIPDLSKCVNLFDLQLRDNQLTGMVPPSLMSMLQLR 10
                  +M QLSQVWLQKN FTG IPD SKC  LFDLQLRDNQ TG+VPPSLMS+  L 
Sbjct: 222 GSIDLLSSMTQLSQVWLQKNQFTGQIPDFSKCEGLFDLQLRDNQFTGIVPPSLMSLSSLL 281

Query: 9   NVS 1
           NVS
Sbjct: 282 NVS 284


>ref|XP_003552433.1| PREDICTED: probable receptor protein kinase TMK1-like isoform 2
           [Glycine max]
          Length = 928

 Score =  161 bits (408), Expect = 5e-38
 Identities = 80/124 (64%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
 Frame = -1

Query: 369 VNLSASNVNMMGSLPDIFGKFLSLQSVRLSYNNLTGVLPSSFNGTGVQNLWLNNQMXXXX 190
           V L   N N++G+LPD+F KF+SLQ +RLSYNNLTG LP SF G+ +QNLWLNNQ     
Sbjct: 166 VKLDLGNANLIGTLPDVFDKFVSLQELRLSYNNLTGGLPKSFGGSEIQNLWLNNQNGFGF 225

Query: 189 XXXXXXG-TMAQLSQVWLQKNSFTGPIPDLSKCVNLFDLQLRDNQLTGMVPPSLMSMLQL 13
                   +M  LSQVWLQKN FTGPIPDLS C  LFDLQLRDNQLTG+VPPSLMS+  L
Sbjct: 226 SGSIEVLASMTHLSQVWLQKNQFTGPIPDLSNCTTLFDLQLRDNQLTGVVPPSLMSLSSL 285

Query: 12  RNVS 1
           +NVS
Sbjct: 286 QNVS 289


>ref|XP_003552432.1| PREDICTED: probable receptor protein kinase TMK1-like isoform 1
           [Glycine max]
          Length = 928

 Score =  161 bits (408), Expect = 5e-38
 Identities = 80/124 (64%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
 Frame = -1

Query: 369 VNLSASNVNMMGSLPDIFGKFLSLQSVRLSYNNLTGVLPSSFNGTGVQNLWLNNQMXXXX 190
           V L   N N++G+LPD+F KF+SLQ +RLSYNNLTG LP SF G+ +QNLWLNNQ     
Sbjct: 166 VKLDLGNANLIGTLPDVFDKFVSLQELRLSYNNLTGGLPKSFGGSEIQNLWLNNQNGFGF 225

Query: 189 XXXXXXG-TMAQLSQVWLQKNSFTGPIPDLSKCVNLFDLQLRDNQLTGMVPPSLMSMLQL 13
                   +M  LSQVWLQKN FTGPIPDLS C  LFDLQLRDNQLTG+VPPSLMS+  L
Sbjct: 226 SGSIEVLASMTHLSQVWLQKNQFTGPIPDLSNCTTLFDLQLRDNQLTGVVPPSLMSLSSL 285

Query: 12  RNVS 1
           +NVS
Sbjct: 286 QNVS 289


>ref|XP_003537524.1| PREDICTED: probable receptor protein kinase TMK1-like [Glycine max]
          Length = 927

 Score =  159 bits (401), Expect = 3e-37
 Identities = 78/124 (62%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
 Frame = -1

Query: 369 VNLSASNVNMMGSLPDIFGKFLSLQSVRLSYNNLTGVLPSSFNGTGVQNLWLNNQMXXXX 190
           V L   N N++G+LPD+F KF+SL  +RLSYNNLTGVLP SF G+ +QN+WLNNQ     
Sbjct: 166 VKLELGNANLIGTLPDVFDKFVSLVELRLSYNNLTGVLPKSFAGSAIQNMWLNNQNGFGF 225

Query: 189 XXXXXXG-TMAQLSQVWLQKNSFTGPIPDLSKCVNLFDLQLRDNQLTGMVPPSLMSMLQL 13
                   +M  LSQVWLQKN FTGPIPDLS C  LFDLQLRDNQLTG+VPPSLMS+  L
Sbjct: 226 SGTIEVLASMTHLSQVWLQKNQFTGPIPDLSNCTTLFDLQLRDNQLTGVVPPSLMSLSGL 285

Query: 12  RNVS 1
           +NV+
Sbjct: 286 QNVT 289


Top