BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029148
         (316 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN69087.1| hypothetical protein VITISV_031061 [Vitis vinifera]    89   3e-16
gb|AAD17351.1| contains similarity to retrovirus-related polypro...    82   6e-14
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                  80   2e-13
gb|ADB85432.1| putative retrotransposon protein [Phyllostachys e...    76   3e-12
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                  76   3e-12

>emb|CAN69087.1| hypothetical protein VITISV_031061 [Vitis vinifera]
          Length = 611

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 40/65 (61%), Positives = 51/65 (78%)
 Frame = -1

Query: 199 SIFRTRCISKGKLCTVVIDGGSTDNVVSQEMVDKLGLQTTKHPKPFSIQWFKKGDPVAVN 20
           +IFRT C S GKLC  +IDGGS++N+VSQEMVDKL L+  KHP+P+ I WF KG+ V V+
Sbjct: 256 NIFRTSCTSGGKLCNFIIDGGSSENLVSQEMVDKLKLKMEKHPQPYCILWFNKGNEVLVS 315

Query: 19  HQCLV 5
            +CLV
Sbjct: 316 SKCLV 320


>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
           zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
           E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
           putative polyprotein [Arabidopsis thaliana]
          Length = 1138

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 35/73 (47%), Positives = 50/73 (68%)
 Frame = -1

Query: 220 KET*KRHSIFRTRCISKGKLCTVVIDGGSTDNVVSQEMVDKLGLQTTKHPKPFSIQWFKK 41
           +E  +R ++F TRC+ KGK+C+++IDGGS  NV S+ MV KLGL+   HPKP+ +QW  +
Sbjct: 341 EEQAQRENLFHTRCLIKGKVCSLIIDGGSCTNVASETMVQKLGLEEFPHPKPYKLQWLNE 400

Query: 40  GDPVAVNHQCLVP 2
              +AV  Q  VP
Sbjct: 401 SGEMAVTRQVQVP 413


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 38/86 (44%), Positives = 51/86 (59%)
 Frame = -1

Query: 262 SLVATLAMIIGEGDKET*KRHSIFRTRCISKGKLCTVVIDGGSTDNVVSQEMVDKLGLQT 83
           SLV    M       E  +R  IFR+RC  KG++C ++IDGGS  NV S  +++KL L T
Sbjct: 366 SLVTWRVMHTQPQPLEMDQRQQIFRSRCTIKGRVCNLIIDGGSCTNVASSTLIEKLSLPT 425

Query: 82  TKHPKPFSIQWFKKGDPVAVNHQCLV 5
             HP P+ ++W  KG  V V+ QCLV
Sbjct: 426 QDHPSPYKLRWLNKGAEVRVDKQCLV 451


>gb|ADB85432.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 870

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 37/83 (44%), Positives = 50/83 (60%)
 Frame = -1

Query: 268 HFSLVATLAMIIGEGDKET*KRHSIFRTRCISKGKLCTVVIDGGSTDNVVSQEMVDKLGL 89
           H SLVA   +       E  +RH++F+TR + K + C V+IDGGS +N+ S EMV K GL
Sbjct: 441 HMSLVAQRVLSAQVERAEQNQRHNLFQTRFLVKDRACRVIIDGGSCNNLASSEMVKKFGL 500

Query: 88  QTTKHPKPFSIQWFKKGDPVAVN 20
            T  HP+P+ IQWF     + VN
Sbjct: 501 ATQPHPRPYYIQWFNSCGKLKVN 523


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 32/71 (45%), Positives = 47/71 (66%)
 Frame = -1

Query: 217 ET*KRHSIFRTRCISKGKLCTVVIDGGSTDNVVSQEMVDKLGLQTTKHPKPFSIQWFKKG 38
           E  +R  IFR+RC  +G++C ++I+GGS  NV S  MV KLGL T +HP P+ ++W  K 
Sbjct: 392 EADQRSMIFRSRCTVQGRVCNLIINGGSCTNVASTTMVSKLGLPTQEHPNPYKLRWLSKD 451

Query: 37  DPVAVNHQCLV 5
             V V+ QC++
Sbjct: 452 SGVRVDKQCII 462