BLASTX nr result

ID: Coptis25_contig00029086 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029086
         (315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003524275.1| PREDICTED: uncharacterized protein LOC100806...    99   3e-19
ref|XP_002306324.1| predicted protein [Populus trichocarpa] gi|2...    98   8e-19
ref|XP_003630069.1| Fasciclin-like arabinogalactan protein [Medi...    96   2e-18
ref|XP_003532841.1| PREDICTED: uncharacterized protein LOC100793...    96   3e-18
ref|XP_003607265.1| Fasciclin-like arabinogalactan protein [Medi...    95   5e-18

>ref|XP_003524275.1| PREDICTED: uncharacterized protein LOC100806312 [Glycine max]
          Length = 444

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 54/95 (56%), Positives = 63/95 (66%), Gaps = 3/95 (3%)
 Frame = -3

Query: 313 ILTTLGFQELAVAVPSLSDSAY---YTWNGPSTVFAPTDDXXXXXXXXXXXXXXXXVPQI 143
           IL+ LGF ELA A PSLSD+A      W GPST+FAP+D                 VP +
Sbjct: 65  ILSHLGFHELATAAPSLSDAATTGSVAWTGPSTIFAPSD-------ASLRTCFSCSVPNL 117

Query: 142 LREHIVPGIFSYDYLNKLAFGTKLETMSTGRCITV 38
           LREHIVPG+F+ DYL KLAFGTK+ET+S GRCITV
Sbjct: 118 LREHIVPGLFTIDYLRKLAFGTKIETLSPGRCITV 152


>ref|XP_002306324.1| predicted protein [Populus trichocarpa] gi|222855773|gb|EEE93320.1|
           predicted protein [Populus trichocarpa]
          Length = 442

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 52/93 (55%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
 Frame = -3

Query: 313 ILTTLGFQELAVAVPSL-SDSAYYTWNGPSTVFAPTDDXXXXXXXXXXXXXXXXVPQILR 137
           IL+ LGF +LA+AVPSL +DS    W+GPST+FAP+D                  P +L 
Sbjct: 66  ILSHLGFTQLAMAVPSLPADSTTTAWSGPSTLFAPSDSSLRTCFSCSI-------PDLLH 118

Query: 136 EHIVPGIFSYDYLNKLAFGTKLETMSTGRCITV 38
           EHIVPG+FS DYL KLAFGTK+ET+S GRCITV
Sbjct: 119 EHIVPGLFSIDYLRKLAFGTKIETLSPGRCITV 151


>ref|XP_003630069.1| Fasciclin-like arabinogalactan protein [Medicago truncatula]
           gi|355524091|gb|AET04545.1| Fasciclin-like
           arabinogalactan protein [Medicago truncatula]
          Length = 448

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 52/95 (54%), Positives = 63/95 (66%), Gaps = 3/95 (3%)
 Frame = -3

Query: 313 ILTTLGFQELAVAVPSLSDSAYYT---WNGPSTVFAPTDDXXXXXXXXXXXXXXXXVPQI 143
           IL+ LGF ELA A PSLSD+A  T   W GP T+FAP+D                 VP +
Sbjct: 63  ILSHLGFHELATAAPSLSDAATTTSPAWTGPFTIFAPSD-------ASLRTCFSCSVPNL 115

Query: 142 LREHIVPGIFSYDYLNKLAFGTKLETMSTGRCITV 38
           LREHIVPGIF+ +YL +LAFGTK+ET+S GRC+TV
Sbjct: 116 LREHIVPGIFTIEYLRRLAFGTKIETLSPGRCVTV 150


>ref|XP_003532841.1| PREDICTED: uncharacterized protein LOC100793476 [Glycine max]
          Length = 440

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 52/95 (54%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
 Frame = -3

Query: 313 ILTTLGFQELAVAVPSLSDSAYY---TWNGPSTVFAPTDDXXXXXXXXXXXXXXXXVPQI 143
           IL+ LGF +LA A PSLSD+A      W GPST+FAP+D                 VP +
Sbjct: 65  ILSHLGFHQLATAAPSLSDTATTGSAAWTGPSTIFAPSD-------ASLRTCFSCSVPNL 117

Query: 142 LREHIVPGIFSYDYLNKLAFGTKLETMSTGRCITV 38
           LREHIVPG+F+ DYL KLAFGTK+ET+S G CITV
Sbjct: 118 LREHIVPGLFTIDYLRKLAFGTKIETLSPGHCITV 152


>ref|XP_003607265.1| Fasciclin-like arabinogalactan protein [Medicago truncatula]
           gi|355508320|gb|AES89462.1| Fasciclin-like
           arabinogalactan protein [Medicago truncatula]
          Length = 454

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 51/95 (53%), Positives = 63/95 (66%), Gaps = 3/95 (3%)
 Frame = -3

Query: 313 ILTTLGFQELAVAVPSLSDSAYYT---WNGPSTVFAPTDDXXXXXXXXXXXXXXXXVPQI 143
           IL+ LGF ELA A P+LSD+A  T   W GP T+FAP+D                 VP +
Sbjct: 63  ILSHLGFHELATAAPTLSDAATTTSLAWTGPFTIFAPSD-------ASIRTCFSCSVPNL 115

Query: 142 LREHIVPGIFSYDYLNKLAFGTKLETMSTGRCITV 38
           LREHIVPGIF+ +YL +LAFGTK+ET+S GRC+TV
Sbjct: 116 LREHIVPGIFTIEYLRRLAFGTKIETLSPGRCVTV 150


Top