BLASTX nr result
ID: Coptis25_contig00029064
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00029064
(613 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo... 97 2e-27
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 96 3e-27
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ... 96 5e-27
gb|AAP53315.2| retrotransposon protein, putative, unclassified [... 96 5e-27
emb|CAN77449.1| hypothetical protein VITISV_016970 [Vitis vinifera] 85 9e-27
>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
Length = 1594
Score = 97.1 bits (240), Expect(2) = 2e-27
Identities = 46/117 (39%), Positives = 75/117 (64%)
Frame = +3
Query: 3 INFEKSGIDFSPNMPSSDITNIMHLLHMRKITIGEKYLGLTLFLGQPKTRIFNHLIDKVN 182
IN +KS + FSPN S + +M L+M++ T EKYLGL +F+G+ +T+IF++L +++
Sbjct: 943 INKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIW 1002
Query: 183 IRIAGWKSKLLSQAARTVLIKSISSAIHVFHMNTFLLPNSMTSTLNAIPRDFWWGGK 353
RI GWK KLLS+A + +LIK+++ AI F M F L + ++ + +WW +
Sbjct: 1003 QRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTKDLCDQISKMIAKYWWSNQ 1059
Score = 51.2 bits (121), Expect(2) = 2e-27
Identities = 28/84 (33%), Positives = 42/84 (50%)
Frame = +1
Query: 352 NTGKKHPLYLKSWSFICQSKKGGGLGIRDMETNNLANLSKILWNIITKPDFFLSTQLKGK 531
N K + ++ SW+ + K GGLG RD+ NLA L+K W +I PD S L+ K
Sbjct: 1058 NQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAK 1117
Query: 532 YHHSANILPTVHKSSSSWFWQGMQ 603
Y + S+ S+ W+ +Q
Sbjct: 1118 YFPLGDCFRPKQTSNVSYTWRSIQ 1141
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 96.3 bits (238), Expect(2) = 3e-27
Identities = 45/117 (38%), Positives = 75/117 (64%)
Frame = +3
Query: 3 INFEKSGIDFSPNMPSSDITNIMHLLHMRKITIGEKYLGLTLFLGQPKTRIFNHLIDKVN 182
IN +KS + FSPN S + +M L+M++ T E+YLGL +F+G+ +T+IF++L +++
Sbjct: 970 INKDKSAVMFSPNTSSLEKRAVMAALNMQRETTNERYLGLPVFVGRSRTKIFSYLKERIW 1029
Query: 183 IRIAGWKSKLLSQAARTVLIKSISSAIHVFHMNTFLLPNSMTSTLNAIPRDFWWGGK 353
RI GWK KLLS+A + +LIK+++ AI F M F L + ++ + +WW +
Sbjct: 1030 QRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTKDLCDQISKMIAKYWWSNQ 1086
Score = 51.2 bits (121), Expect(2) = 3e-27
Identities = 28/84 (33%), Positives = 42/84 (50%)
Frame = +1
Query: 352 NTGKKHPLYLKSWSFICQSKKGGGLGIRDMETNNLANLSKILWNIITKPDFFLSTQLKGK 531
N K + ++ SW+ + K GGLG RD+ NLA L+K W +I PD S L+ K
Sbjct: 1085 NQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAK 1144
Query: 532 YHHSANILPTVHKSSSSWFWQGMQ 603
Y + S+ S+ W+ +Q
Sbjct: 1145 YFPLGDCFRPKQTSNVSYTWRSIQ 1168
>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1509
Score = 95.5 bits (236), Expect(2) = 5e-27
Identities = 45/117 (38%), Positives = 74/117 (63%)
Frame = +3
Query: 3 INFEKSGIDFSPNMPSSDITNIMHLLHMRKITIGEKYLGLTLFLGQPKTRIFNHLIDKVN 182
IN +KS + FSPN S + +M L+M++ T EKYLGL +F+G+ +T+IF++L +++
Sbjct: 915 INKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIW 974
Query: 183 IRIAGWKSKLLSQAARTVLIKSISSAIHVFHMNTFLLPNSMTSTLNAIPRDFWWGGK 353
RI GWK KLLS+A + +LIK+++ I F M F L + ++ + +WW +
Sbjct: 975 QRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYWWSNQ 1031
Score = 51.2 bits (121), Expect(2) = 5e-27
Identities = 28/84 (33%), Positives = 42/84 (50%)
Frame = +1
Query: 352 NTGKKHPLYLKSWSFICQSKKGGGLGIRDMETNNLANLSKILWNIITKPDFFLSTQLKGK 531
N K + ++ SW+ + K GGLG RD+ NLA L+K W +I PD S L+ K
Sbjct: 1030 NQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAK 1089
Query: 532 YHHSANILPTVHKSSSSWFWQGMQ 603
Y + S+ S+ W+ +Q
Sbjct: 1090 YFPLGDCFRPKQTSNVSYTWRSIQ 1113
>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1505
Score = 95.5 bits (236), Expect(2) = 5e-27
Identities = 45/117 (38%), Positives = 74/117 (63%)
Frame = +3
Query: 3 INFEKSGIDFSPNMPSSDITNIMHLLHMRKITIGEKYLGLTLFLGQPKTRIFNHLIDKVN 182
IN +KS + FSPN S + +M L+M++ T EKYLGL +F+G+ +T+IF++L +++
Sbjct: 911 INKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIW 970
Query: 183 IRIAGWKSKLLSQAARTVLIKSISSAIHVFHMNTFLLPNSMTSTLNAIPRDFWWGGK 353
RI GWK KLLS+A + +LIK+++ I F M F L + ++ + +WW +
Sbjct: 971 QRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYWWSNQ 1027
Score = 51.2 bits (121), Expect(2) = 5e-27
Identities = 28/84 (33%), Positives = 42/84 (50%)
Frame = +1
Query: 352 NTGKKHPLYLKSWSFICQSKKGGGLGIRDMETNNLANLSKILWNIITKPDFFLSTQLKGK 531
N K + ++ SW+ + K GGLG RD+ NLA L+K W +I PD S L+ K
Sbjct: 1026 NQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAK 1085
Query: 532 YHHSANILPTVHKSSSSWFWQGMQ 603
Y + S+ S+ W+ +Q
Sbjct: 1086 YFPLGDCFRPKQTSNVSYTWRSIQ 1109
>emb|CAN77449.1| hypothetical protein VITISV_016970 [Vitis vinifera]
Length = 517
Score = 84.7 bits (208), Expect(2) = 9e-27
Identities = 46/112 (41%), Positives = 66/112 (58%)
Frame = +3
Query: 18 SGIDFSPNMPSSDITNIMHLLHMRKITIGEKYLGLTLFLGQPKTRIFNHLIDKVNIRIAG 197
+GI FS N S D I ++L + +YLGL +G+ K +F L D++ R+ G
Sbjct: 120 NGIFFSKNASSLDRDFISNILGVSTPLNTGRYLGLLSLIGKSKRVVFGFLRDRLWRRLQG 179
Query: 198 WKSKLLSQAARTVLIKSISSAIHVFHMNTFLLPNSMTSTLNAIPRDFWWGGK 353
W+SKLLSQA + +LIK + AI + M+TFLLP S++ L + FWWG K
Sbjct: 180 WQSKLLSQAGKKILIKVVGQAIPSYCMSTFLLPISLSEELQKMMNSFWWGPK 231
Score = 61.2 bits (147), Expect(2) = 9e-27
Identities = 29/72 (40%), Positives = 43/72 (59%)
Frame = +1
Query: 385 SWSFICQSKKGGGLGIRDMETNNLANLSKILWNIITKPDFFLSTQLKGKYHHSANILPTV 564
SW +C K+ GGLG R++ NLA L K WN+ITKPD ++ LK +Y+ S + L
Sbjct: 242 SWDKLCLRKEEGGLGFRNLRDFNLAMLGKQGWNLITKPDSLIARLLKARYYCSRDFLSAR 301
Query: 565 HKSSSSWFWQGM 600
+ S+ W+G+
Sbjct: 302 LSHNPSFTWKGI 313