BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00029040
         (455 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_201383.1| pentatricopeptide repeat-containing protein [Ar...    74   1e-11
ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat...    74   1e-11
emb|CAA16678.1| predicted protein [Arabidopsis thaliana]               74   1e-11
ref|XP_002866691.1| pentatricopeptide repeat-containing protein ...    74   2e-11
ref|XP_002302657.1| predicted protein [Populus trichocarpa] gi|2...    72   5e-11

>ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At5g65820 gi|9758569|dbj|BAB09050.1| unnamed
           protein product [Arabidopsis thaliana]
           gi|332010728|gb|AED98111.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 39/89 (43%), Positives = 54/89 (60%)
 Frame = -2

Query: 268 IHHDAHIDKKSQASHKIISGSPFISLGDKTNVYRNNQLNSDEYSADVEKLYRILRKFHTR 89
           IH   H+ +  + + +  +G   + L +K++  R      DE+++DVEK YRILRKFH+R
Sbjct: 38  IHRSFHVSRALEDNFRRSNGIGLVCL-EKSHNDRTKNSKYDEFASDVEKSYRILRKFHSR 96

Query: 88  APKLELALQEXXXXXXXXXVERVLNRCGD 2
            PKLELAL E         +ERVLNRCGD
Sbjct: 97  VPKLELALNESGVELRPGLIERVLNRCGD 125


>ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 36/51 (70%), Positives = 39/51 (76%)
 Frame = -2

Query: 154 NSDEYSADVEKLYRILRKFHTRAPKLELALQEXXXXXXXXXVERVLNRCGD 2
           N DE+SADVEK+YRILRKFH+R PKLELALQE          ERVLNRCGD
Sbjct: 50  NYDEFSADVEKVYRILRKFHSRVPKLELALQESGVAVRSGLTERVLNRCGD 100


>emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
          Length = 598

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 39/89 (43%), Positives = 54/89 (60%)
 Frame = -2

Query: 268 IHHDAHIDKKSQASHKIISGSPFISLGDKTNVYRNNQLNSDEYSADVEKLYRILRKFHTR 89
           IH   H+ +  + + +  +G   + L +K++  R      DE+++DVEK YRILRKFH+R
Sbjct: 31  IHRSFHVSRALEDNFRRSNGIGLVCL-EKSHNDRTKNSKYDEFASDVEKSYRILRKFHSR 89

Query: 88  APKLELALQEXXXXXXXXXVERVLNRCGD 2
            PKLELAL E         +ERVLNRCGD
Sbjct: 90  VPKLELALNESGVELRPGLIERVLNRCGD 118


>ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297312526|gb|EFH42950.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 638

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
 Frame = -2

Query: 268 IHHDAHIDKKSQASHKIISGSPFISLGDKTNVYRNNQLNS--DEYSADVEKLYRILRKFH 95
           IH   H+ +  + + +  +G   + L +K + + +   NS  DE+++DVEK YRILRKFH
Sbjct: 37  IHRSFHVSRALEDNFRRSNGIGLVCL-EKNHNHNDRTKNSKYDEFASDVEKAYRILRKFH 95

Query: 94  TRAPKLELALQEXXXXXXXXXVERVLNRCGD 2
           +R PKLELAL E         +ERVLNRCGD
Sbjct: 96  SRVPKLELALNESGVELRPGLIERVLNRCGD 126


>ref|XP_002302657.1| predicted protein [Populus trichocarpa] gi|222844383|gb|EEE81930.1|
           predicted protein [Populus trichocarpa]
          Length = 602

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
 Frame = -2

Query: 253 HIDKKSQASHKIISGSPFISLGDKTNVYRNNQLNS--DEYSADVEKLYRILRKFHTRAPK 80
           H +  +  S+K  +G   ISL  +    + ++ ++  DE+++DVEK+YR+LRKFH+R PK
Sbjct: 8   HQNPSNNISNKTTNGFGLISLKTQQPQPQPHEQDNKVDEFASDVEKVYRLLRKFHSRVPK 67

Query: 79  LELALQEXXXXXXXXXVERVLNRCGD 2
           LELALQE          ERVLNRCGD
Sbjct: 68  LELALQESGVVLRNGLTERVLNRCGD 93