BLASTX nr result
ID: Coptis25_contig00028999
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00028999 (384 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002530214.1| pentatricopeptide repeat-containing protein,... 77 2e-12 ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat... 75 4e-12 emb|CBI28441.3| unnamed protein product [Vitis vinifera] 75 4e-12 emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera] 75 4e-12 ref|XP_002330643.1| predicted protein [Populus trichocarpa] gi|2... 70 2e-10 >ref|XP_002530214.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223530261|gb|EEF32161.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 834 Score = 76.6 bits (187), Expect = 2e-12 Identities = 34/65 (52%), Positives = 49/65 (75%) Frame = -2 Query: 383 FTSSEEGRKKGREIHAFVVRNRLNDVKVSIGNELVNMYAKSGSIETLLTVF*LLSLKDLI 204 FT EEGR+KGRE+H F +R LND+KV+IGN L+NMYAK G+++ +VF L++ +D + Sbjct: 259 FTLLEEGRRKGREVHGFAIRTGLNDIKVAIGNGLINMYAKCGAVDDARSVFRLMNDRDAV 318 Query: 203 SLNEI 189 S N + Sbjct: 319 SWNSM 323 >ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950 [Vitis vinifera] Length = 1736 Score = 75.5 bits (184), Expect = 4e-12 Identities = 38/65 (58%), Positives = 48/65 (73%) Frame = -2 Query: 383 FTSSEEGRKKGREIHAFVVRNRLNDVKVSIGNELVNMYAKSGSIETLLTVF*LLSLKDLI 204 F+ EEGR+KGRE+HA V+R LND KV+IGN LVNMYAKSG+I +VF L+ KD + Sbjct: 395 FSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSV 454 Query: 203 SLNEI 189 S N + Sbjct: 455 SWNSL 459 >emb|CBI28441.3| unnamed protein product [Vitis vinifera] Length = 913 Score = 75.5 bits (184), Expect = 4e-12 Identities = 38/65 (58%), Positives = 48/65 (73%) Frame = -2 Query: 383 FTSSEEGRKKGREIHAFVVRNRLNDVKVSIGNELVNMYAKSGSIETLLTVF*LLSLKDLI 204 F+ EEGR+KGRE+HA V+R LND KV+IGN LVNMYAKSG+I +VF L+ KD + Sbjct: 313 FSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSV 372 Query: 203 SLNEI 189 S N + Sbjct: 373 SWNSL 377 >emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera] Length = 1539 Score = 75.5 bits (184), Expect = 4e-12 Identities = 38/65 (58%), Positives = 48/65 (73%) Frame = -2 Query: 383 FTSSEEGRKKGREIHAFVVRNRLNDVKVSIGNELVNMYAKSGSIETLLTVF*LLSLKDLI 204 F+ EEGR+KGRE+HA V+R LND KV+IGN LVNMYAKSG+I +VF L+ KD + Sbjct: 868 FSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSV 927 Query: 203 SLNEI 189 S N + Sbjct: 928 SWNSL 932 >ref|XP_002330643.1| predicted protein [Populus trichocarpa] gi|222872247|gb|EEF09378.1| predicted protein [Populus trichocarpa] Length = 777 Score = 70.1 bits (170), Expect = 2e-10 Identities = 32/65 (49%), Positives = 45/65 (69%) Frame = -2 Query: 383 FTSSEEGRKKGREIHAFVVRNRLNDVKVSIGNELVNMYAKSGSIETLLTVF*LLSLKDLI 204 F +EGR+KGRE+H + +R LND KV++GN L+NMYAK G I+ +VF L+ KD + Sbjct: 264 FALLDEGRRKGREVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSV 323 Query: 203 SLNEI 189 S N + Sbjct: 324 SWNSM 328