BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028993
         (410 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containi...   183   1e-44
emb|CBI30210.3| unnamed protein product [Vitis vinifera]              183   1e-44
ref|XP_002323489.1| predicted protein [Populus trichocarpa] gi|2...   177   6e-43
ref|XP_003520676.1| PREDICTED: pentatricopeptide repeat-containi...   174   7e-42
emb|CAB85500.1| putative protein [Arabidopsis thaliana]               163   1e-38

>ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Vitis vinifera]
          Length = 882

 Score =  183 bits (464), Expect = 1e-44
 Identities = 85/133 (63%), Positives = 109/133 (81%)
 Frame = -3

Query: 402 VVSIFERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEG 223
           VV++FE+M  +DVITWT M+ A+M+FG+ + AL+ F +MP ++ ISYNA+LSGFC NGEG
Sbjct: 326 VVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEG 385

Query: 222 LQALKLFQGMLERGMELSDFTLTSIVNACALLSQVEISKQIHGFVIKFGFGSNPWIEAAL 43
            +AL  F  M+E G+EL+DFTLT ++NAC LL + +ISKQIHGF++KFGFGSN  IEAAL
Sbjct: 386 SKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAAL 445

Query: 42  LDMCTRCGRMAHA 4
           LDMCTRCGRMA A
Sbjct: 446 LDMCTRCGRMADA 458



 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 39/118 (33%), Positives = 71/118 (60%)
 Frame = -3

Query: 372 KDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEGLQALKLFQGM 193
           +D+     +++A++K GMV +A K FV +   + +SY A++SGF  +    QA+++F  M
Sbjct: 103 EDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRM 162

Query: 192 LERGMELSDFTLTSIVNACALLSQVEISKQIHGFVIKFGFGSNPWIEAALLDMCTRCG 19
              G+EL++F+  +I+  C  L  +E+  Q+H  VIK GF +  ++  AL+ +  +CG
Sbjct: 163 RSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCG 220



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
 Frame = -3

Query: 330 KFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEGLQALKLFQGMLE-RGMELSDFTLT 154
           K G ++S L+ F +MP +   S+N ++S         +A +LF+ M    G  +  FTL+
Sbjct: 218 KCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLS 277

Query: 153 SIVNACALLSQVEISKQIHGFVIKFGFGSNPWIEAALLDMCTRCGRMAH 7
           +I+ A   L+ + + ++IH  VIK GF SN  +  AL+   T+CG + H
Sbjct: 278 TILVAARGLASM-VGREIHAHVIKIGFESNISVINALIRFYTKCGSIKH 325


>emb|CBI30210.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score =  183 bits (464), Expect = 1e-44
 Identities = 85/133 (63%), Positives = 109/133 (81%)
 Frame = -3

Query: 402 VVSIFERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEG 223
           VV++FE+M  +DVITWT M+ A+M+FG+ + AL+ F +MP ++ ISYNA+LSGFC NGEG
Sbjct: 344 VVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEG 403

Query: 222 LQALKLFQGMLERGMELSDFTLTSIVNACALLSQVEISKQIHGFVIKFGFGSNPWIEAAL 43
            +AL  F  M+E G+EL+DFTLT ++NAC LL + +ISKQIHGF++KFGFGSN  IEAAL
Sbjct: 404 SKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAAL 463

Query: 42  LDMCTRCGRMAHA 4
           LDMCTRCGRMA A
Sbjct: 464 LDMCTRCGRMADA 476



 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 39/118 (33%), Positives = 71/118 (60%)
 Frame = -3

Query: 372 KDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEGLQALKLFQGM 193
           +D+     +++A++K GMV +A K FV +   + +SY A++SGF  +    QA+++F  M
Sbjct: 121 EDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRM 180

Query: 192 LERGMELSDFTLTSIVNACALLSQVEISKQIHGFVIKFGFGSNPWIEAALLDMCTRCG 19
              G+EL++F+  +I+  C  L  +E+  Q+H  VIK GF +  ++  AL+ +  +CG
Sbjct: 181 RSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCG 238



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
 Frame = -3

Query: 330 KFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEGLQALKLFQGMLE-RGMELSDFTLT 154
           K G ++S L+ F +MP +   S+N ++S         +A +LF+ M    G  +  FTL+
Sbjct: 236 KCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLS 295

Query: 153 SIVNACALLSQVEISKQIHGFVIKFGFGSNPWIEAALLDMCTRCGRMAH 7
           +I+ A   L+ + + ++IH  VIK GF SN  +  AL+   T+CG + H
Sbjct: 296 TILVAARGLASM-VGREIHAHVIKIGFESNISVINALIRFYTKCGSIKH 343


>ref|XP_002323489.1| predicted protein [Populus trichocarpa] gi|222868119|gb|EEF05250.1|
           predicted protein [Populus trichocarpa]
          Length = 915

 Score =  177 bits (450), Expect = 6e-43
 Identities = 81/133 (60%), Positives = 108/133 (81%)
 Frame = -3

Query: 402 VVSIFERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEG 223
           V ++FERMP +D+ITWT M+ A+M+FG+V+ A+  F +MP K+ +SYNALL+GFC N EG
Sbjct: 359 VAALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGFCKNNEG 418

Query: 222 LQALKLFQGMLERGMELSDFTLTSIVNACALLSQVEISKQIHGFVIKFGFGSNPWIEAAL 43
           L+AL LF  M++ G EL+DFTLT ++NAC LL ++EIS+QIHGF+IKFGF SN  IEAAL
Sbjct: 419 LKALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFIIKFGFRSNACIEAAL 478

Query: 42  LDMCTRCGRMAHA 4
           +DMC++CGRM  A
Sbjct: 479 IDMCSKCGRMDDA 491



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 36/123 (29%), Positives = 68/123 (55%)
 Frame = -3

Query: 372 KDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEGLQALKLFQGM 193
           +D      ++ A++K G+V  A + F+ M T   +SY+AL+S F       +A++LF  M
Sbjct: 135 EDTHLGNAVIAAYIKLGLVVDAYEVFMGMSTPDVVSYSALISSFSKLNRETEAIQLFFRM 194

Query: 192 LERGMELSDFTLTSIVNACALLSQVEISKQIHGFVIKFGFGSNPWIEAALLDMCTRCGRM 13
              G+E ++++  +I+ AC    ++E+  Q+H   IK G+    ++  AL+ +  +CG +
Sbjct: 195 RISGIEPNEYSFVAILTACIRSLELEMGLQVHALAIKLGYSQLVFVANALIGLYGKCGCL 254

Query: 12  AHA 4
            HA
Sbjct: 255 DHA 257



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
 Frame = -3

Query: 366 VITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEGLQALKLFQGMLE 187
           V     ++  + K G ++ A+  F +MP +   S+N ++S         +AL+LF+ + +
Sbjct: 238 VFVANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLNQ 297

Query: 186 -RGMELSDFTLTSIVNACALLSQVEISKQIHGFVIKFGFGSNPWIEAALLDMCTRCGRMA 10
            +G +   FTL++++ ACA        ++IH + I+ G  +N  +  A++   TRCG + 
Sbjct: 298 NKGFKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLN 357

Query: 9   H 7
           H
Sbjct: 358 H 358


>ref|XP_003520676.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Glycine max]
          Length = 874

 Score =  174 bits (441), Expect = 7e-42
 Identities = 80/135 (59%), Positives = 106/135 (78%)
 Frame = -3

Query: 408 DDVVSIFERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNG 229
           DDV  +FE M  +DVITWT MV A+M+FG+V  ALK F +MP K+ +SYN +L+GFC N 
Sbjct: 316 DDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEKNSVSYNTVLAGFCRNE 375

Query: 228 EGLQALKLFQGMLERGMELSDFTLTSIVNACALLSQVEISKQIHGFVIKFGFGSNPWIEA 49
           +G +A++LF  M+E G+EL+DF+LTS+V+AC LL   ++SKQ+HGF +KFGFGSN ++EA
Sbjct: 376 QGFEAMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFGFGSNGYVEA 435

Query: 48  ALLDMCTRCGRMAHA 4
           ALLDM TRCGRM  A
Sbjct: 436 ALLDMYTRCGRMVDA 450


>emb|CAB85500.1| putative protein [Arabidopsis thaliana]
          Length = 837

 Score =  163 bits (413), Expect = 1e-38
 Identities = 77/133 (57%), Positives = 104/133 (78%)
 Frame = -3

Query: 402 VVSIFERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEG 223
           V S++E M  +D +T+T M+ A+M FGMV+SA++ F  +  K+ I+YNAL++GFC NG G
Sbjct: 339 VESLYEMMMAQDAVTFTEMITAYMSFGMVDSAVEIFANVTEKNTITYNALMAGFCRNGHG 398

Query: 222 LQALKLFQGMLERGMELSDFTLTSIVNACALLSQVEISKQIHGFVIKFGFGSNPWIEAAL 43
           L+ALKLF  ML+RG+EL+DF+LTS V+AC L+S+ ++S+QIHGF IKFG   NP I+ AL
Sbjct: 399 LKALKLFTDMLQRGVELTDFSLTSAVDACGLVSEKKVSEQIHGFCIKFGTAFNPCIQTAL 458

Query: 42  LDMCTRCGRMAHA 4
           LDMCTRC RMA A
Sbjct: 459 LDMCTRCERMADA 471



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 33/120 (27%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
 Frame = -3

Query: 390 FERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEGLQAL 211
           F ++ E+       ++  ++K G    A+  FV + + + +SY AL+SGF      ++AL
Sbjct: 106 FLKLREEKTRLGNALISTYLKLGFPREAILVFVSLSSPTVVSYTALISGFSRLNLEIEAL 165

Query: 210 KLFQGMLERGM-ELSDFTLTSIVNACALLSQVEISKQIHGFVIKFGFGSNPWIEAALLDM 34
           K+F  M + G+ + +++T  +I+ AC  +S+  +  QIHG ++K GF ++ ++  +L+ +
Sbjct: 166 KVFFRMRKAGLVQPNEYTFVAILTACVRVSRFSLGIQIHGLIVKSGFLNSVFVSNSLMSL 225