BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028962
         (351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [...   154   7e-36
ref|XP_002275304.2| PREDICTED: DNA mismatch repair protein Msh2 ...   153   1e-35
emb|CBI15412.3| unnamed protein product [Vitis vinifera]              153   1e-35
gb|AFD23453.1| mismatch repair protein, partial [Solanum cheesma...   153   2e-35
ref|NP_001234067.1| mismatch repair protein [Solanum lycopersicu...   153   2e-35

>ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [Ricinus communis]
           gi|223549157|gb|EEF50646.1| DNA mismatch repair protein
           MSH2, putative [Ricinus communis]
          Length = 936

 Score =  154 bits (389), Expect = 7e-36
 Identities = 76/116 (65%), Positives = 89/116 (76%)
 Frame = -3

Query: 349 NVESTLVALGCKECLVPLESGKSVESKNLQEALSRCGVLVTERKKTEFKSRDLVQDLSRL 170
           N+ES LVALGCKECL+P+ESGKS+E + L +AL+RCGV++TERKK EFK+RDLV+DL RL
Sbjct: 179 NLESALVALGCKECLLPIESGKSIECRTLHDALTRCGVMLTERKKNEFKTRDLVEDLGRL 238

Query: 169 VKGSIEPVRDLVSNMXXXXXXXXXXXXXXXXXADERNYGNYTIQRYNLDGYMRLDS 2
           VKGSIEPVRDLVS                   ADE NYGNYTI++YNLD YMRLDS
Sbjct: 239 VKGSIEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNYTIRKYNLDSYMRLDS 294


>ref|XP_002275304.2| PREDICTED: DNA mismatch repair protein Msh2 [Vitis vinifera]
          Length = 902

 Score =  153 bits (387), Expect = 1e-35
 Identities = 78/116 (67%), Positives = 88/116 (75%)
 Frame = -3

Query: 349 NVESTLVALGCKECLVPLESGKSVESKNLQEALSRCGVLVTERKKTEFKSRDLVQDLSRL 170
           NVES LVALGC+ECL+P ES KS E++ L +ALSRCGV++TERK+TEFK+RDLVQDL RL
Sbjct: 143 NVESALVALGCRECLLPSESAKSSETRTLHDALSRCGVMLTERKRTEFKARDLVQDLGRL 202

Query: 169 VKGSIEPVRDLVSNMXXXXXXXXXXXXXXXXXADERNYGNYTIQRYNLDGYMRLDS 2
           VKGSIEPVRDLVS                   ADE NYGN+TIQRYNLD YMRLDS
Sbjct: 203 VKGSIEPVRDLVSGFELAPGALGLLLSYAELLADESNYGNFTIQRYNLDSYMRLDS 258


>emb|CBI15412.3| unnamed protein product [Vitis vinifera]
          Length = 945

 Score =  153 bits (387), Expect = 1e-35
 Identities = 78/116 (67%), Positives = 88/116 (75%)
 Frame = -3

Query: 349 NVESTLVALGCKECLVPLESGKSVESKNLQEALSRCGVLVTERKKTEFKSRDLVQDLSRL 170
           NVES LVALGC+ECL+P ES KS E++ L +ALSRCGV++TERK+TEFK+RDLVQDL RL
Sbjct: 183 NVESALVALGCRECLLPSESAKSSETRTLHDALSRCGVMLTERKRTEFKARDLVQDLGRL 242

Query: 169 VKGSIEPVRDLVSNMXXXXXXXXXXXXXXXXXADERNYGNYTIQRYNLDGYMRLDS 2
           VKGSIEPVRDLVS                   ADE NYGN+TIQRYNLD YMRLDS
Sbjct: 243 VKGSIEPVRDLVSGFELAPGALGLLLSYAELLADESNYGNFTIQRYNLDSYMRLDS 298


>gb|AFD23453.1| mismatch repair protein, partial [Solanum cheesmaniae]
           gi|379995944|gb|AFD23455.1| mismatch repair protein,
           partial [Solanum lycopersicum var. cerasiforme]
           gi|379995948|gb|AFD23457.1| mismatch repair protein,
           partial [Solanum lycopersicum]
          Length = 317

 Score =  153 bits (386), Expect = 2e-35
 Identities = 76/116 (65%), Positives = 89/116 (76%)
 Frame = -3

Query: 349 NVESTLVALGCKECLVPLESGKSVESKNLQEALSRCGVLVTERKKTEFKSRDLVQDLSRL 170
           N+ES LVALGC+ECLVP E+GKS ES+ L +A+SRCGV+VTERKKTEFK RDLVQDL RL
Sbjct: 6   NLESALVALGCRECLVPTETGKSSESRPLYDAISRCGVMVTERKKTEFKGRDLVQDLGRL 65

Query: 169 VKGSIEPVRDLVSNMXXXXXXXXXXXXXXXXXADERNYGNYTIQRYNLDGYMRLDS 2
           VKGS+EPVRDLVS+                  AD+ NYGNYT+++YNLD YMRLDS
Sbjct: 66  VKGSVEPVRDLVSSFECAAGALGCILSYAELLADDSNYGNYTVKQYNLDSYMRLDS 121


>ref|NP_001234067.1| mismatch repair protein [Solanum lycopersicum]
           gi|296034481|gb|ADG85112.1| mismatch repair protein
           [Solanum lycopersicum]
          Length = 943

 Score =  153 bits (386), Expect = 2e-35
 Identities = 76/116 (65%), Positives = 89/116 (76%)
 Frame = -3

Query: 349 NVESTLVALGCKECLVPLESGKSVESKNLQEALSRCGVLVTERKKTEFKSRDLVQDLSRL 170
           N+ES LVALGC+ECLVP E+GKS ES+ L +A+SRCGV+VTERKKTEFK RDLVQDL RL
Sbjct: 183 NLESALVALGCRECLVPTETGKSSESRPLYDAISRCGVMVTERKKTEFKGRDLVQDLGRL 242

Query: 169 VKGSIEPVRDLVSNMXXXXXXXXXXXXXXXXXADERNYGNYTIQRYNLDGYMRLDS 2
           VKGS+EPVRDLVS+                  AD+ NYGNYT+++YNLD YMRLDS
Sbjct: 243 VKGSVEPVRDLVSSFECAAGALGCILSYAELLADDSNYGNYTVKQYNLDSYMRLDS 298