BLASTX nr result

ID: Coptis25_contig00028937 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028937
         (642 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN82852.1| hypothetical protein VITISV_041720 [Vitis vinifera]    69   7e-10
ref|XP_002313779.1| predicted protein [Populus trichocarpa] gi|2...    66   6e-09
ref|XP_002283641.1| PREDICTED: uncharacterized protein LOC100245...    65   8e-09
ref|NP_001236665.1| uncharacterized protein LOC100500603 precurs...    63   4e-08
ref|XP_003627749.1| hypothetical protein MTR_8g037800 [Medicago ...    63   5e-08

>emb|CAN82852.1| hypothetical protein VITISV_041720 [Vitis vinifera]
          Length = 249

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 36/67 (53%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
 Frame = +2

Query: 143 AGRKWRVMENSFMDLTATEKEMQSKFFYHGETSE-VHERLLRINTRDYGEYDSAPTLVKP 319
           AGR+ ++   S     A  KE+  K  +H   +E +HERLLR NTRDYG YD AP L KP
Sbjct: 183 AGRRSKLASKSIXVADAVFKEISRKPSHHYRRAEAIHERLLRANTRDYGNYDPAPALGKP 242

Query: 320 PFKLIPN 340
           PFKLIPN
Sbjct: 243 PFKLIPN 249


>ref|XP_002313779.1| predicted protein [Populus trichocarpa] gi|222850187|gb|EEE87734.1|
           predicted protein [Populus trichocarpa]
          Length = 94

 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 29/50 (58%), Positives = 38/50 (76%)
 Frame = +2

Query: 191 ATEKEMQSKFFYHGETSEVHERLLRINTRDYGEYDSAPTLVKPPFKLIPN 340
           AT +E+ SK  ++ E + +HERLL+ NT+DYG Y  AP LV+PPFKLIPN
Sbjct: 45  ATYEEISSKPSHNNEATTIHERLLKANTKDYGNYKPAPALVRPPFKLIPN 94


>ref|XP_002283641.1| PREDICTED: uncharacterized protein LOC100245294 [Vitis vinifera]
           gi|297744426|emb|CBI37688.3| unnamed protein product
           [Vitis vinifera]
          Length = 95

 Score = 65.5 bits (158), Expect = 8e-09
 Identities = 35/67 (52%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
 Frame = +2

Query: 143 AGRKWRVMENSFMDLTATEKEMQSKFFYHGETSE-VHERLLRINTRDYGEYDSAPTLVKP 319
           AGR+ ++   S     A  KE+  K  +    +E +HERLLR NTRDYG YD AP L KP
Sbjct: 29  AGRRSKLASKSIHVADAVFKEISRKPSHQYRRAEAIHERLLRANTRDYGNYDPAPALGKP 88

Query: 320 PFKLIPN 340
           PFKLIPN
Sbjct: 89  PFKLIPN 95


>ref|NP_001236665.1| uncharacterized protein LOC100500603 precursor [Glycine max]
           gi|255630736|gb|ACU15729.1| unknown [Glycine max]
          Length = 93

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 30/59 (50%), Positives = 38/59 (64%)
 Frame = +2

Query: 164 MENSFMDLTATEKEMQSKFFYHGETSEVHERLLRINTRDYGEYDSAPTLVKPPFKLIPN 340
           ++N   D+ A E+    K     E   +HERLLR NT+DYG YD +P+L KPPFKLIPN
Sbjct: 35  IKNFAKDVNAIEEGTPRKPLNKEEVRTIHERLLRANTKDYGRYDPSPSLSKPPFKLIPN 93


>ref|XP_003627749.1| hypothetical protein MTR_8g037800 [Medicago truncatula]
           gi|355521771|gb|AET02225.1| hypothetical protein
           MTR_8g037800 [Medicago truncatula]
           gi|388492214|gb|AFK34173.1| unknown [Medicago
           truncatula]
          Length = 91

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 31/66 (46%), Positives = 37/66 (56%)
 Frame = +2

Query: 143 AGRKWRVMENSFMDLTATEKEMQSKFFYHGETSEVHERLLRINTRDYGEYDSAPTLVKPP 322
           AGR    +  S  D+ A  +          E   +HERLLR NT+DYG YD +PT  KPP
Sbjct: 26  AGRASNFIRISNEDVNAVHEVTTKMAMNEEEVRSIHERLLRANTKDYGRYDPSPTFSKPP 85

Query: 323 FKLIPN 340
           FKLIPN
Sbjct: 86  FKLIPN 91


Top