BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028923
         (749 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFW73911.1| 26S protease regulatory subunit 6A [Zea mays]           62   1e-11
ref|NP_001141483.1| uncharacterized protein LOC100273594 [Zea ma...    62   1e-11
gb|ACF85198.1| unknown [Zea mays] gi|223950171|gb|ACN29169.1| un...    62   1e-11
ref|XP_002283831.2| PREDICTED: 26S protease regulatory subunit 6...    60   2e-11
gb|ACG37308.1| 26S protease regulatory subunit 6A [Zea mays]           62   2e-11

>gb|AFW73911.1| 26S protease regulatory subunit 6A [Zea mays]
          Length = 449

 Score = 62.0 bits (149), Expect(2) = 1e-11
 Identities = 41/84 (48%), Positives = 52/84 (61%), Gaps = 7/84 (8%)
 Frame = -3

Query: 405 STQRLTKHNQDKIKLYKQPPYLVSNVFEILELVPED----DVAIVNLNSQRKGKSVNLGQ 238
           S +  TK NQ+KIKL KQ PYLV N+ EILE+ PED    D A ++L+SQRKGK V L  
Sbjct: 56  SIKEKTKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKT 115

Query: 237 TNLSSFFFFERQLV---KLELGNL 175
           +   + F     LV   KL+ G+L
Sbjct: 116 STRQTIFLPVIGLVDPDKLKPGDL 139



 Score = 33.9 bits (76), Expect(2) = 1e-11
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = -2

Query: 463 EDDRFDSMSTDEISRSSRLFDTKI 392
           EDD+  SMST+EI+R+SRL D +I
Sbjct: 17  EDDQLASMSTEEITRASRLLDNEI 40


>ref|NP_001141483.1| uncharacterized protein LOC100273594 [Zea mays]
           gi|194704750|gb|ACF86459.1| unknown [Zea mays]
          Length = 428

 Score = 62.0 bits (149), Expect(2) = 1e-11
 Identities = 41/84 (48%), Positives = 52/84 (61%), Gaps = 7/84 (8%)
 Frame = -3

Query: 405 STQRLTKHNQDKIKLYKQPPYLVSNVFEILELVPED----DVAIVNLNSQRKGKSVNLGQ 238
           S +  TK NQ+KIKL KQ PYLV N+ EILE+ PED    D A ++L+SQRKGK V L  
Sbjct: 56  SIKEKTKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKT 115

Query: 237 TNLSSFFFFERQLV---KLELGNL 175
           +   + F     LV   KL+ G+L
Sbjct: 116 STRQTIFLPVIGLVDPDKLKPGDL 139



 Score = 33.9 bits (76), Expect(2) = 1e-11
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = -2

Query: 463 EDDRFDSMSTDEISRSSRLFDTKI 392
           EDD+  SMST+EI+R+SRL D +I
Sbjct: 17  EDDQLASMSTEEITRASRLLDNEI 40


>gb|ACF85198.1| unknown [Zea mays] gi|223950171|gb|ACN29169.1| unknown [Zea mays]
           gi|413939358|gb|AFW73909.1| 26S protease regulatory
           subunit 6A isoform 1 [Zea mays]
           gi|413939359|gb|AFW73910.1| 26S protease regulatory
           subunit 6A isoform 2 [Zea mays]
          Length = 428

 Score = 62.0 bits (149), Expect(2) = 1e-11
 Identities = 41/84 (48%), Positives = 52/84 (61%), Gaps = 7/84 (8%)
 Frame = -3

Query: 405 STQRLTKHNQDKIKLYKQPPYLVSNVFEILELVPED----DVAIVNLNSQRKGKSVNLGQ 238
           S +  TK NQ+KIKL KQ PYLV N+ EILE+ PED    D A ++L+SQRKGK V L  
Sbjct: 56  SIKEKTKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKT 115

Query: 237 TNLSSFFFFERQLV---KLELGNL 175
           +   + F     LV   KL+ G+L
Sbjct: 116 STRQTIFLPVIGLVDPDKLKPGDL 139



 Score = 33.9 bits (76), Expect(2) = 1e-11
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = -2

Query: 463 EDDRFDSMSTDEISRSSRLFDTKI 392
           EDD+  SMST+EI+R+SRL D +I
Sbjct: 17  EDDQLASMSTEEITRASRLLDNEI 40


>ref|XP_002283831.2| PREDICTED: 26S protease regulatory subunit 6A homolog A [Vitis
           vinifera]
          Length = 508

 Score = 60.5 bits (145), Expect(2) = 2e-11
 Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 7/78 (8%)
 Frame = -3

Query: 387 KHNQDKIKLYKQPPYLVSNVFEILELVPEDDV----AIVNLNSQRKGKSVNLGQTNLSSF 220
           K NQ+KIKL KQ PYLV N+ EILE+ PEDD     A ++L+SQRKGK V L  +   + 
Sbjct: 142 KENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTI 201

Query: 219 FFFERQLV---KLELGNL 175
           F     LV   KL+ G+L
Sbjct: 202 FLPVVGLVDPDKLKPGDL 219



 Score = 34.3 bits (77), Expect(2) = 2e-11
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = -2

Query: 463 EDDRFDSMSTDEISRSSRLFDTKI 392
           EDD+  SMSTD+I+R+SRL D +I
Sbjct: 97  EDDQLASMSTDDIARASRLLDNEI 120


>gb|ACG37308.1| 26S protease regulatory subunit 6A [Zea mays]
          Length = 428

 Score = 62.0 bits (149), Expect(2) = 2e-11
 Identities = 41/84 (48%), Positives = 52/84 (61%), Gaps = 7/84 (8%)
 Frame = -3

Query: 405 STQRLTKHNQDKIKLYKQPPYLVSNVFEILELVPED----DVAIVNLNSQRKGKSVNLGQ 238
           S +  TK NQ+KIKL KQ PYLV N+ EILE+ PED    D A ++L+SQRKGK V L  
Sbjct: 56  SIKEKTKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKT 115

Query: 237 TNLSSFFFFERQLV---KLELGNL 175
           +   + F     LV   KL+ G+L
Sbjct: 116 STRQTIFLPVIGLVDPDKLKPGDL 139



 Score = 32.7 bits (73), Expect(2) = 2e-11
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -2

Query: 463 EDDRFDSMSTDEISRSSRLFDTKI 392
           EDD+  SMST+EI R+SRL D +I
Sbjct: 17  EDDQLASMSTEEIIRASRLLDNEI 40