BLASTX nr result
ID: Coptis25_contig00028907
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00028907
(462 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002310252.1| predicted protein [Populus trichocarpa] gi|2... 176 2e-42
ref|XP_004146551.1| PREDICTED: pentatricopeptide repeat-containi... 158 4e-37
ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containi... 152 4e-35
ref|XP_002521555.1| pentatricopeptide repeat-containing protein,... 151 6e-35
emb|CBI32639.3| unnamed protein product [Vitis vinifera] 150 1e-34
>ref|XP_002310252.1| predicted protein [Populus trichocarpa] gi|222853155|gb|EEE90702.1|
predicted protein [Populus trichocarpa]
Length = 540
Score = 176 bits (446), Expect = 2e-42
Identities = 85/153 (55%), Positives = 113/153 (73%)
Frame = -3
Query: 460 QVHALFIKYCSELETVANSAFLDMYFKCDCANDSVKVFEEMKYKDVITWNTMISGLVKFG 281
QVHAL IK ++L T+ +A +DMY K C +SVKVFEEM+++DV+TWN ++S ++ G
Sbjct: 113 QVHALMIKTGTDLGTITKTAVMDMYSKYGCLGESVKVFEEMEFRDVVTWNALVSSFLRHG 172
Query: 280 MEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALVIVMGCDLLVLSTA 101
+ A+ VF+AMR E VE + F LCSVLKACA +K+ + GK+VH LVIVMG DL+VL TA
Sbjct: 173 LAKEALGVFRAMRRESVEITEFTLCSVLKACAFIKAFRQGKQVHGLVIVMGRDLVVLGTA 232
Query: 100 LIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNAL 2
LID YS+ G I E +KVFS LSC+KD + N+L
Sbjct: 233 LIDFYSNVGYISEAMKVFSCLSCRKDEVLRNSL 265
Score = 61.6 bits (148), Expect = 6e-08
Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = -3
Query: 352 VFEEMKYKDVITWNTMISGLVKFGMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKS 173
+F+E+ ++D+ + N+ ++ + G +F + ++ + VL+AC+ +
Sbjct: 48 LFDELPHRDLYSLNSQLASYSRDGNFLATWDLFSRIHSAFLDLDAYTFTPVLRACSALPD 107
Query: 172 LKHGKEVHALVIVMGCDL-LVLSTALIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNAL 2
K G++VHAL+I G DL + TA++D+YS G + E +KVF + +D +NAL
Sbjct: 108 TKCGRQVHALMIKTGTDLGTITKTAVMDMYSKYGCLGESVKVFEEMEF-RDVVTWNAL 164
Score = 55.1 bits (131), Expect = 6e-06
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Frame = -3
Query: 460 QVHALFIKYCSELETVANSAFLDMYFKCDCANDSVKVFEEMKYKDVITWNTMISGLVKFG 281
Q+H + +++ T + LDMY KC S +F+ + +K V++W +MI + G
Sbjct: 310 QIHCVALRFGFIANTQVCNVLLDMYAKCGRILKSRSIFDGICHKTVVSWTSMIDAYGRHG 369
Query: 280 MEGYAVRVFKAMREE--RVEFSGFILCSVLKACAVMKSLKHGKEV 152
A+++FK M +E RV + L +VL AC +K G+E+
Sbjct: 370 HGDEALKLFKEMGQEGSRVLPNSLTLLAVLSACGHSGLVKEGQEL 414
>ref|XP_004146551.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
mitochondrial-like [Cucumis sativus]
gi|449529896|ref|XP_004171934.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g66500,
mitochondrial-like [Cucumis sativus]
Length = 544
Score = 158 bits (400), Expect = 4e-37
Identities = 76/152 (50%), Positives = 107/152 (70%)
Frame = -3
Query: 457 VHALFIKYCSELETVANSAFLDMYFKCDCANDSVKVFEEMKYKDVITWNTMISGLVKFGM 278
VH L IK + V +A LDMY KC +DSVKVFEEM+ +DV+ WN+++S ++ G+
Sbjct: 114 VHGLIIKTGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGL 173
Query: 277 EGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALVIVMGCDLLVLSTAL 98
A+ VF+ M+ E+VEFS F LCSVLKACA ++ + GK+VH +V+VM D+LVL TAL
Sbjct: 174 AEEALNVFEEMKREKVEFSEFTLCSVLKACAALEDYRLGKQVHGVVVVMNRDMLVLGTAL 233
Query: 97 IDLYSDCGMIDEGLKVFSYLSCKKDNAIYNAL 2
+D YS G I E +KV++ L+C+KD+ I N+L
Sbjct: 234 VDFYSSVGCISEAVKVYTSLNCRKDDIILNSL 265
Score = 65.1 bits (157), Expect = 6e-09
Identities = 34/119 (28%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Frame = -3
Query: 355 KVFEEMKYKDVITWNTMISGLVKFGMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMK 176
++F+E+ D+ + N++++ V+ + A +F M + L +VL AC+ +
Sbjct: 47 QLFDELPQTDIPSLNSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSALP 106
Query: 175 SLKHGKEVHALVIVMGC-DLLVLSTALIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNAL 2
+ ++G+ VH L+I G +V TA++D+YS CG++D+ +KVF + +D +N+L
Sbjct: 107 TSQYGQLVHGLIIKTGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEME-MRDVVAWNSL 164
Score = 54.3 bits (129), Expect = 1e-05
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 2/155 (1%)
Frame = -3
Query: 460 QVHALFIKYCSELETVANSAFLDMYFKCDCANDSVKVFEEMKY-KDVITWNTMISGLVKF 284
QVH + + ++ V +A +D Y C +++VKV+ + KD I N++ISG V+
Sbjct: 214 QVHGVVVVMNRDM-LVLGTALVDFYSSVGCISEAVKVYTSLNCRKDDIILNSLISGCVRN 272
Query: 283 GMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALVIVMG-CDLLVLS 107
A + MR + L S L AC+ L GK++H + + G L
Sbjct: 273 KRYEEAFSLMSKMRPNAIA-----LTSALHACSENSDLWIGKQIHCVSVRHGLTSNTQLC 327
Query: 106 TALIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNAL 2
L+D+Y+ CG + VF + C K+ ++++
Sbjct: 328 NILLDMYAKCGKVLNARAVFDGM-CHKNVVSWSSM 361
>ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
mitochondrial-like, partial [Vitis vinifera]
Length = 498
Score = 152 bits (383), Expect = 4e-35
Identities = 77/153 (50%), Positives = 107/153 (69%)
Frame = -3
Query: 460 QVHALFIKYCSELETVANSAFLDMYFKCDCANDSVKVFEEMKYKDVITWNTMISGLVKFG 281
QVHAL IK S+ TV +A +DMY K SV+VFEE+ +KDV+TWNTM+S V+ G
Sbjct: 61 QVHALAIKTGSDTPTVTKTALMDMYSKYGQLGSSVRVFEEVGFKDVVTWNTMLSSFVRHG 120
Query: 280 MEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALVIVMGCDLLVLSTA 101
A+ VF+ M++E V S F LCS+LKAC ++K+ + GK+VHALV+VMG DL+VL TA
Sbjct: 121 RPEEALAVFREMQKEGVWLSEFTLCSLLKACTLLKAFQQGKQVHALVVVMGRDLVVLGTA 180
Query: 100 LIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNAL 2
LID Y++ I E +++F L+ KKD+ + N+L
Sbjct: 181 LIDFYTNVECIGEAMEIFHNLNWKKDDVMRNSL 213
Score = 61.2 bits (147), Expect = 8e-08
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
Frame = -3
Query: 460 QVHALFIKYCSELETVANSAFLDMYFKCDCANDSVKVFEEMKYK-DVITWNTMISGLVKF 284
QVHAL + +L V +A +D Y +C +++++F + +K D + N++ISG V+
Sbjct: 162 QVHALVVVMGRDL-VVLGTALIDFYTNVECIGEAMEIFHNLNWKKDDVMRNSLISGCVRN 220
Query: 283 GMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALVIVMGCDL-LVLS 107
A + AMR V + S L AC+ L GK++H + + G L
Sbjct: 221 RRYKEAFLIMSAMRPNVVAVT-----SALAACSKNSDLWVGKQIHCVAMRFGFTFDTQLC 275
Query: 106 TALIDLYSDCGMIDEGLKVFSYLSCKKD 23
L+D+Y+ CG I +F + KKD
Sbjct: 276 NVLLDMYAKCGKILNARSLFDRMD-KKD 302
Score = 56.2 bits (134), Expect = 3e-06
Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = -3
Query: 349 FEEMKYKDVITWNTMISGLVKFGMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSL 170
F+EM ++D+ T N++I+ V+ G A+ VF+ + + + L VL AV+ +
Sbjct: 1 FDEMPHRDLYTLNSLIASHVRSGNAVAALSVFRRIHRAGSHLNSYTLTPVL---AVLDPI 57
Query: 169 KHGKEVHALVIVMGCDL-LVLSTALIDLYSDCGMIDEGLKVFSYLSCK 29
GK+VHAL I G D V TAL+D+YS G + ++VF + K
Sbjct: 58 -CGKQVHALAIKTGSDTPTVTKTALMDMYSKYGQLGSSVRVFEEVGFK 104
>ref|XP_002521555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539233|gb|EEF40826.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 418
Score = 151 bits (381), Expect = 6e-35
Identities = 78/154 (50%), Positives = 105/154 (68%), Gaps = 1/154 (0%)
Frame = -3
Query: 460 QVHALFIKYCSELETVANSAFLDMYFKCDCANDSVKVFEEMKYKDVITWNTMISGLVKFG 281
QVHAL IK ++L +A +A +DMY K DSVK FEE++++DV+TWN+++S ++ G
Sbjct: 99 QVHALMIKAGTDLGPIAKTALIDMYSKYGYLGDSVKAFEEVEFRDVVTWNSLLSSFLRHG 158
Query: 280 MEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALV-IVMGCDLLVLST 104
+ A+ +F AMR E VEFS F LCSVLKACA +K+ GK+VH LV + +VL T
Sbjct: 159 LSNKALGIFGAMRREGVEFSEFTLCSVLKACAAVKAFSQGKQVHGLVGLSWAVIWVVLGT 218
Query: 103 ALIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNAL 2
ALID YS G +DE LKVFS LS + D+ I N+L
Sbjct: 219 ALIDFYSTVGYVDEALKVFSSLSWRTDDVICNSL 252
Score = 56.6 bits (135), Expect = 2e-06
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Frame = -3
Query: 352 VFEEMKYKDVITWNTMISGLVKFGMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKS 173
+F+E ++ + + N+ ++ + G +F M ++ + VL AC+ +
Sbjct: 34 LFDEFPHRSLYSLNSQLASFSRLGDFLATWALFYRMHCACLDLDAYTFTPVLSACSALPG 93
Query: 172 LKHGKEVHALVIVMGCDL-LVLSTALIDLYSDCGMIDEGLKVFSYLSCKKDNAIYNAL 2
+ GK+VHAL+I G DL + TALID+YS G + + +K F + +D +N+L
Sbjct: 94 AERGKQVHALMIKAGTDLGPIAKTALIDMYSKYGYLGDSVKAFEEVEF-RDVVTWNSL 150
>emb|CBI32639.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 150 bits (378), Expect = 1e-34
Identities = 76/152 (50%), Positives = 106/152 (69%)
Frame = -3
Query: 457 VHALFIKYCSELETVANSAFLDMYFKCDCANDSVKVFEEMKYKDVITWNTMISGLVKFGM 278
VHAL IK S+ TV +A +DMY K SV+VFEE+ +KDV+TWNTM+S V+ G
Sbjct: 23 VHALAIKTGSDTPTVTKTALMDMYSKYGQLGSSVRVFEEVGFKDVVTWNTMLSSFVRHGR 82
Query: 277 EGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALVIVMGCDLLVLSTAL 98
A+ VF+ M++E V S F LCS+LKAC ++K+ + GK+VHALV+VMG DL+VL TAL
Sbjct: 83 PEEALAVFREMQKEGVWLSEFTLCSLLKACTLLKAFQQGKQVHALVVVMGRDLVVLGTAL 142
Query: 97 IDLYSDCGMIDEGLKVFSYLSCKKDNAIYNAL 2
ID Y++ I E +++F L+ KKD+ + N+L
Sbjct: 143 IDFYTNVECIGEAMEIFHNLNWKKDDVMRNSL 174
Score = 61.2 bits (147), Expect = 8e-08
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
Frame = -3
Query: 460 QVHALFIKYCSELETVANSAFLDMYFKCDCANDSVKVFEEMKYK-DVITWNTMISGLVKF 284
QVHAL + +L V +A +D Y +C +++++F + +K D + N++ISG V+
Sbjct: 123 QVHALVVVMGRDL-VVLGTALIDFYTNVECIGEAMEIFHNLNWKKDDVMRNSLISGCVRN 181
Query: 283 GMEGYAVRVFKAMREERVEFSGFILCSVLKACAVMKSLKHGKEVHALVIVMGCDL-LVLS 107
A + AMR V + S L AC+ L GK++H + + G L
Sbjct: 182 RRYKEAFLIMSAMRPNVVAVT-----SALAACSKNSDLWVGKQIHCVAMRFGFTFDTQLC 236
Query: 106 TALIDLYSDCGMIDEGLKVFSYLSCKKD 23
L+D+Y+ CG I +F + KKD
Sbjct: 237 NVLLDMYAKCGKILNARSLFDRMD-KKD 263