BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028895
         (325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat...    99   5e-19
ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18
dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]     97   2e-18
ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containi...    96   2e-18
emb|CBI23204.3| unnamed protein product [Vitis vinifera]               96   2e-18

>ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 43/106 (40%), Positives = 71/106 (66%)
 Frame = -2

Query: 324 EIHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNG 145
           EIHGY+ R+  + D  + ++LI +Y++C  V+ + C F   +NRD ISW+S++ G VQNG
Sbjct: 220 EIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNG 279

Query: 144 YFSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQGKEVHLW 7
            F + LG F  ML  K++P  V+ +S++ ACA ++A+  GK++H +
Sbjct: 280 RFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAY 325



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 30/110 (27%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
 Frame = -2

Query: 324 EIHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFT--DATNRDVISWSSMVVGYVQ 151
           ++H Y  R   + ++ + ++L+ +Y++CG+++ A  IF   +  +RD++SW+++++G   
Sbjct: 321 QLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAM 380

Query: 150 NGYFSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQGKEVHLWAY 1
           +G+   A+  F EML   ++P  VA  ++L+AC+    + +G     W Y
Sbjct: 381 HGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEG-----WKY 425


>ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 47/107 (43%), Positives = 69/107 (64%)
 Frame = -2

Query: 324 EIHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNG 145
           EIHG+  RN LE D  +  +L+S+Y +C S+     IF    N+ ++ W+ M+ G+ QN 
Sbjct: 523 EIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNE 582

Query: 144 YFSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQGKEVHLWA 4
              +AL TF +MLSG I+P  +AVT +L AC+ +SA+R GKEVH +A
Sbjct: 583 LPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFA 629



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 36/104 (34%), Positives = 61/104 (58%)
 Frame = -2

Query: 324 EIHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNG 145
           EIHGY++R+    D  V NA ++ Y++C S+  A  +F     + V SW++++  + QNG
Sbjct: 422 EIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNG 481

Query: 144 YFSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQGKEVH 13
           +  K+L  F  M+   + P+   + S+L ACA +  +R GKE+H
Sbjct: 482 FPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIH 525



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
 Frame = -2

Query: 321 IHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNGY 142
           +H  + +    SD  V NALI++Y +CG V+ A  +F    NR+++SW+S++    +NG 
Sbjct: 217 VHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGG 276

Query: 141 FSKALGTFGEMLSGK---IQPNPVAVTSILSACAGISAIRQGKEVHLWAY 1
           F +  G F  +L  +   + P+   + +++ ACA +  +R G  VH  A+
Sbjct: 277 FGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAF 326



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
 Frame = -2

Query: 321 IHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNGY 142
           +HG +++  +  +  V N+L+ +YS+CG +  A  +F     ++V+SW++++ GY + G 
Sbjct: 321 VHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGD 380

Query: 141 FSKALGTFGEM-LSGKIQPNPVAVTSILSACAGISAIRQGKEVHLWAY 1
           F        EM    K++ N V V ++L AC+G   +   KE+H +A+
Sbjct: 381 FRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAF 428



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 30/103 (29%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
 Frame = -2

Query: 309 SYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNGYFSKA 130
           S  ++L +D  ++  +I++YS CGS   +  +F  A  +D+  +++++ GY +N  F  A
Sbjct: 119 SASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDA 178

Query: 129 LGTFGEMLSG-KIQPNPVAVTSILSACAGISAIRQGKEVHLWA 4
           +  F E+LS   + P+   +  +  ACAG++ +  G+ VH  A
Sbjct: 179 ISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALA 221



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/100 (28%), Positives = 51/100 (51%)
 Frame = -2

Query: 324 EIHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNG 145
           E+H ++ +  L  D  VT ALI +Y++CG ++ +  IF     +D   W+ ++ GY  +G
Sbjct: 624 EVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHG 683

Query: 144 YFSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQG 25
           +  KA+  F  M +   +P+      +L AC     + +G
Sbjct: 684 HGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEG 723


>dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 43/104 (41%), Positives = 68/104 (65%)
 Frame = -2

Query: 324 EIHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNG 145
           +IHGY+YR   ESD  V NALI +Y +C  +  A  +F    NR+++SW++M+ GY+QN 
Sbjct: 259 QIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNS 318

Query: 144 YFSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQGKEVH 13
             ++A+  F ++     QP+  A TSIL++C  ++AI QG++VH
Sbjct: 319 LDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVH 362



 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 35/100 (35%), Positives = 57/100 (57%)
 Frame = -2

Query: 324 EIHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNG 145
           + H    +   +SD  ++NALI +Y++CG ++    +F     +DVI W+SM+  Y Q+G
Sbjct: 562 QFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFESTLGKDVICWNSMISTYAQHG 621

Query: 144 YFSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQG 25
           +  +AL  FG M    ++PN V   S+LSACA    + +G
Sbjct: 622 HAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEG 661



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 31/108 (28%), Positives = 63/108 (58%)
 Frame = -2

Query: 324 EIHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNG 145
           ++HG + +  L+++  V  AL+++Y++ G +  A  +F     R+ ++W++++ GY Q G
Sbjct: 158 QVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAG 217

Query: 144 YFSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQGKEVHLWAY 1
               AL  FG M    ++P+   + S  SAC+G+  +  G+++H +AY
Sbjct: 218 QAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQIHGYAY 265



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 31/104 (29%), Positives = 57/104 (54%)
 Frame = -2

Query: 324 EIHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNG 145
           ++H +  +  LESD  V NALI +Y++C  +  A  +F      D IS+++M+ GY + G
Sbjct: 360 QVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLG 419

Query: 144 YFSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQGKEVH 13
             + A+  FG+M    ++P+ +   S+L   +  S +   K++H
Sbjct: 420 DLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIH 463



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/104 (26%), Positives = 54/104 (51%)
 Frame = -2

Query: 324 EIHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNG 145
           +IHG   ++    D    +ALI VYS+   V  A  +F+   NRD++ W++M+ G  QN 
Sbjct: 461 QIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNE 520

Query: 144 YFSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQGKEVH 13
              +A+  F  +    + PN     ++++  + +++I  G++ H
Sbjct: 521 RGEEAVKLFARLRVSGLTPNEFTFVALVTVASTLASIFHGQQFH 564


>ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 40/103 (38%), Positives = 68/103 (66%)
 Frame = -2

Query: 321 IHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNGY 142
           +HGY  R R++ D    N+L+++Y++CG ++ +  +F   + RD++SW+++V G+ QNG+
Sbjct: 370 VHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGH 429

Query: 141 FSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQGKEVH 13
             KAL  F EM   + +P+ + V S+L ACA I A+ QGK +H
Sbjct: 430 LCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIH 472



 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 38/103 (36%), Positives = 59/103 (57%)
 Frame = -2

Query: 321 IHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNGY 142
           +HG+  R  LE D  +  +LI +Y +CG+V  A  IF    ++DVISW++M+ G VQN  
Sbjct: 269 VHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDC 328

Query: 141 FSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQGKEVH 13
              A+  F  ML  ++ P+   + S+L+ACA + +   G  VH
Sbjct: 329 ADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVH 371



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 35/99 (35%), Positives = 53/99 (53%)
 Frame = -2

Query: 321 IHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNGY 142
           IH +  ++ L     +  AL+ +YS+CG +  A   F     +D++SWSS++ GY  +G 
Sbjct: 471 IHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGK 530

Query: 141 FSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQG 25
              AL  + + L   IQPN V   SILSAC+    + QG
Sbjct: 531 GETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQG 569



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 35/92 (38%), Positives = 52/92 (56%)
 Frame = -2

Query: 288 SDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNGYFSKALGTFGEM 109
           SD  + N++++VY +CG V+ A  +F     RDVISW+S+V GY Q G   + L     M
Sbjct: 179 SDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRM 238

Query: 108 LSGKIQPNPVAVTSILSACAGISAIRQGKEVH 13
            +  I+P+     S++SA A  S +  GK VH
Sbjct: 239 KTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVH 270


>emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 40/103 (38%), Positives = 68/103 (66%)
 Frame = -2

Query: 321 IHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNGY 142
           +HGY  R R++ D    N+L+++Y++CG ++ +  +F   + RD++SW+++V G+ QNG+
Sbjct: 370 VHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGH 429

Query: 141 FSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQGKEVH 13
             KAL  F EM   + +P+ + V S+L ACA I A+ QGK +H
Sbjct: 430 LCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIH 472



 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 38/103 (36%), Positives = 59/103 (57%)
 Frame = -2

Query: 321 IHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNGY 142
           +HG+  R  LE D  +  +LI +Y +CG+V  A  IF    ++DVISW++M+ G VQN  
Sbjct: 269 VHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDC 328

Query: 141 FSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQGKEVH 13
              A+  F  ML  ++ P+   + S+L+ACA + +   G  VH
Sbjct: 329 ADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVH 371



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 35/99 (35%), Positives = 53/99 (53%)
 Frame = -2

Query: 321 IHGYSYRNRLESDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNGY 142
           IH +  ++ L     +  AL+ +YS+CG +  A   F     +D++SWSS++ GY  +G 
Sbjct: 471 IHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGK 530

Query: 141 FSKALGTFGEMLSGKIQPNPVAVTSILSACAGISAIRQG 25
              AL  + + L   IQPN V   SILSAC+    + QG
Sbjct: 531 GETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQG 569



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 35/92 (38%), Positives = 52/92 (56%)
 Frame = -2

Query: 288 SDRRVTNALISVYSRCGSVQYAACIFTDATNRDVISWSSMVVGYVQNGYFSKALGTFGEM 109
           SD  + N++++VY +CG V+ A  +F     RDVISW+S+V GY Q G   + L     M
Sbjct: 179 SDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRM 238

Query: 108 LSGKIQPNPVAVTSILSACAGISAIRQGKEVH 13
            +  I+P+     S++SA A  S +  GK VH
Sbjct: 239 KTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVH 270