BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028891
         (343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                 95   7e-18
gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Ar...    86   2e-15
emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]    84   9e-15
emb|CAN82221.1| hypothetical protein VITISV_015226 [Vitis vinifera]    84   1e-14
gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thal...    83   3e-14

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 50/117 (42%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
 Frame = -1

Query: 343  VKDLASGRMLFQGQTKNGLYPLHFSAQP--SHFPSFPTAFI*NKASHTIWHSRLGHPAAP 170
            VKDL++G+MLFQG ++ GLYP +++A    S     PTA +  KA    WH RLGHP+  
Sbjct: 683  VKDLSTGKMLFQGPSEGGLYPFYWNASNGVSGIAISPTALMIAKADIHTWHRRLGHPSGG 742

Query: 169  ILHKLIQAKCIEVHNQ-SKSSFCHDCTIGKITKLPFTLSVCKSIAPLQLLHMDLWGP 2
             LH ++    + V    +  S C  C +GK  +L F+   C S  PLQLLH D+WGP
Sbjct: 743  TLHSVVHKNHLPVIGYVNNMSVCTACQLGKSYRLSFSTLPCTSSRPLQLLHTDVWGP 799


>gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Arabidopsis thaliana]
          Length = 1522

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 44/114 (38%), Positives = 65/114 (57%)
 Frame = -1

Query: 343 VKDLASGRMLFQGQTKNGLYPLHFSAQPSHFPSFPTAFI*NKASHTIWHSRLGHPAAPIL 164
           + D A+ ++L  G+ ++GLY L    +P     + T    N AS  +WH RLGH  A +L
Sbjct: 418 INDKATKKLLVMGRNRDGLYSLE---EPKLQVLYSTRQ--NSASSEVWHRRLGHANAEVL 472

Query: 163 HKLIQAKCIEVHNQSKSSFCHDCTIGKITKLPFTLSVCKSIAPLQLLHMDLWGP 2
           H+L  +K I + N+   + C  C +GK T+LPF LS   +  PL+ +H DLWGP
Sbjct: 473 HQLASSKSIIIINKVVKTVCEACHLGKSTRLPFMLSTFNASRPLERIHCDLWGP 526


>emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]
          Length = 590

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 45/115 (39%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
 Frame = -1

Query: 343 VKDLASGRMLFQGQTKNGLYPLHFSAQPSHFPSFPTAFI*NKASHTIWHSRLGHPAAPIL 164
           VKD  +G +L QG  +NG+YP+     PS   + P AF+  + S T WH RLGHP+  ++
Sbjct: 389 VKDRRTGEILLQGPCENGVYPM-----PSSPAATPIAFVHERTSVTGWHQRLGHPSFKVV 443

Query: 163 HKLIQAKCIEVHN-QSKSSFCHDCTIGKITKLPFTLSVCKSIAPLQLLHMDLWGP 2
            +LI +  +   +  S S+ CH C+I K  +LPF      S  P  LL+ D+WGP
Sbjct: 444 TRLISSFSLPTTSCLSGSNNCHSCSINKAHQLPFHKHGLTSTTPFDLLYTDVWGP 498


>emb|CAN82221.1| hypothetical protein VITISV_015226 [Vitis vinifera]
          Length = 1007

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 50/124 (40%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
 Frame = -1

Query: 343 VKDLASGRMLFQGQTKNGLYPLHFSAQPSHFPSFPTAFI*NKASH----------TIWHS 194
           VKD  + ++L QG  ++GLY       P+ F   PTAF+ +              T+WHS
Sbjct: 122 VKDQVTKKILLQGSLEHGLYRF-----PARFVPSPTAFVSSSYDRSSNISLTTITTLWHS 176

Query: 193 RLGHPAAPILHKLIQAKCIEVHNQSKSSFCHDCTIGKITKLPFTLSVCKSIAPLQLLHMD 14
           RLGHPA  IL K I   C   H   K++ C  C   K  KLPF +SV ++  P  LLH D
Sbjct: 177 RLGHPADNIL-KHILTSCNISHQCHKNNVCCACQFAKSHKLPFNVSVSRASHPFALLHAD 235

Query: 13  LWGP 2
           LWGP
Sbjct: 236 LWGP 239


>gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thaliana]
           gi|18265373|dbj|BAB84015.1| polyprotein [Arabidopsis
           thaliana]
          Length = 1466

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 48/114 (42%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
 Frame = -1

Query: 343 VKDLASGRMLFQGQTKNGLYPLHF-SAQPSHFPSFPTAFI*NKASHTIWHSRLGHPAAPI 167
           VKDL +G  L QG+TK+ LY     S+QP    + P++    KA+H+ WH+RLGHPA  I
Sbjct: 423 VKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSS----KATHSSWHARLGHPAPSI 478

Query: 166 LHKLIQAKCIEVHNQS-KSSFCHDCTIGKITKLPFTLSVCKSIAPLQLLHMDLW 8
           L+ +I    + V N S K   C DC I K  K+PF+ S   S  PL+ ++ D+W
Sbjct: 479 LNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVW 532