BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028863
         (399 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI33923.3| unnamed protein product [Vitis vinifera]              200   9e-50
ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containi...   200   9e-50
ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containi...   196   2e-48
ref|XP_002329535.1| predicted protein [Populus trichocarpa] gi|2...   183   1e-44
ref|XP_003561223.1| PREDICTED: pentatricopeptide repeat-containi...   176   2e-42

>emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  200 bits (509), Expect = 9e-50
 Identities = 92/121 (76%), Positives = 102/121 (84%)
 Frame = -1

Query: 399 LSTSLLTMYAKCGAMDLAREVFSEMRERSVVSWNSMIMGYGMHGYGEKALEMFLEMEKSG 220
           LST+LLTMYAKCGAMDLAR+VF +M  RSVVSWNSMIMGYGMHG  +KALEMFL+MEK G
Sbjct: 241 LSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRG 300

Query: 219 ETPNGATFVCVLSACTHAGMVLEGWWYFDLMKRVYKIEPKVEHYGCMVDERFRGAYTKDA 40
             PN ATF+CVLSAC H+GM+LEGWWYFDLM+R YKIEPKVEHYGCMVD   R    KD 
Sbjct: 301 PMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDL 360

Query: 39  D 37
           +
Sbjct: 361 E 361



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 40/94 (42%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
 Frame = -1

Query: 375 YAKCGAMDLAREVFSEMRERSVVSWNSMIMGYGMHGYGEKALEMFLEMEKSGET-PNGAT 199
           YA+   M++A E+F+ M  R+VVSWN M+  Y      ++ L MF +M   GET PN AT
Sbjct: 148 YAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKM--MGETMPNEAT 205

Query: 198 FVCVLSACTHAGMVLEGWWYFDLMKRVYKIEPKV 97
            V VL+AC H G +  G W    +K    IEP V
Sbjct: 206 LVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDV 239


>ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  200 bits (509), Expect = 9e-50
 Identities = 92/121 (76%), Positives = 102/121 (84%)
 Frame = -1

Query: 399 LSTSLLTMYAKCGAMDLAREVFSEMRERSVVSWNSMIMGYGMHGYGEKALEMFLEMEKSG 220
           LST+LLTMYAKCGAMDLAR+VF +M  RSVVSWNSMIMGYGMHG  +KALEMFL+MEK G
Sbjct: 390 LSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRG 449

Query: 219 ETPNGATFVCVLSACTHAGMVLEGWWYFDLMKRVYKIEPKVEHYGCMVDERFRGAYTKDA 40
             PN ATF+CVLSAC H+GM+LEGWWYFDLM+R YKIEPKVEHYGCMVD   R    KD 
Sbjct: 450 PMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDL 509

Query: 39  D 37
           +
Sbjct: 510 E 510



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 40/94 (42%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
 Frame = -1

Query: 375 YAKCGAMDLAREVFSEMRERSVVSWNSMIMGYGMHGYGEKALEMFLEMEKSGET-PNGAT 199
           YA+   M++A E+F+ M  R+VVSWN M+  Y      ++ L MF +M   GET PN AT
Sbjct: 297 YAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKM--MGETMPNEAT 354

Query: 198 FVCVLSACTHAGMVLEGWWYFDLMKRVYKIEPKV 97
            V VL+AC H G +  G W    +K    IEP V
Sbjct: 355 LVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDV 388


>ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  196 bits (498), Expect = 2e-48
 Identities = 91/121 (75%), Positives = 104/121 (85%)
 Frame = -1

Query: 399 LSTSLLTMYAKCGAMDLAREVFSEMRERSVVSWNSMIMGYGMHGYGEKALEMFLEMEKSG 220
           L T LLTMYAKCGAMDLA+ VF EM  RSVVSWNSMIMGYG+HG G+KALE+FLEMEK+G
Sbjct: 341 LLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDKALELFLEMEKAG 400

Query: 219 ETPNGATFVCVLSACTHAGMVLEGWWYFDLMKRVYKIEPKVEHYGCMVDERFRGAYTKDA 40
           + PN ATF+ VLSACTHAGMV+EGWWYFDLM+RVYKIEPKVEHYGCMVD   R    +++
Sbjct: 401 QQPNDATFISVLSACTHAGMVMEGWWYFDLMQRVYKIEPKVEHYGCMVDLLARAGLVENS 460

Query: 39  D 37
           +
Sbjct: 461 E 461


>ref|XP_002329535.1| predicted protein [Populus trichocarpa] gi|222870244|gb|EEF07375.1|
           predicted protein [Populus trichocarpa]
          Length = 617

 Score =  183 bits (464), Expect = 1e-44
 Identities = 83/109 (76%), Positives = 96/109 (88%)
 Frame = -1

Query: 399 LSTSLLTMYAKCGAMDLAREVFSEMRERSVVSWNSMIMGYGMHGYGEKALEMFLEMEKSG 220
           LST+LLTMYAKCGAMDLAREVF +M E+SVVSWNSMI+GYG+HG+G+KALEMF EMEK G
Sbjct: 389 LSTALLTMYAKCGAMDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFREMEKGG 448

Query: 219 ETPNGATFVCVLSACTHAGMVLEGWWYFDLMKRVYKIEPKVEHYGCMVD 73
             PN ATF+ VLSAC+H+GMV  GWWYFDLM R Y+I+PK EHYGC+VD
Sbjct: 449 PMPNDATFMSVLSACSHSGMVWNGWWYFDLMHRKYRIQPKPEHYGCLVD 497


>ref|XP_003561223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 604

 Score =  176 bits (445), Expect = 2e-42
 Identities = 82/131 (62%), Positives = 96/131 (73%)
 Frame = -1

Query: 399 LSTSLLTMYAKCGAMDLAREVFSEMRERSVVSWNSMIMGYGMHGYGEKALEMFLEMEKSG 220
           L T+LLTMYAKCGAM+ ARE+F  M ERSV SWNSMI+GYG+HG  EKALE+FLEMEKSG
Sbjct: 354 LLTALLTMYAKCGAMETAREIFDSMSERSVPSWNSMIIGYGLHGQSEKALELFLEMEKSG 413

Query: 219 ETPNGATFVCVLSACTHAGMVLEGWWYFDLMKRVYKIEPKVEHYGCMVDERFRGAYTKDA 40
             PN  TF+CVLS+C H G+VLEGWW FD M R Y  EPK EH+GCM+D   R    KD+
Sbjct: 414 PRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYGFEPKAEHFGCMMDLLGRAGLLKDS 473

Query: 39  DGGRATLVGSS 7
           +     L G +
Sbjct: 474 ENLIQNLQGKA 484