BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028820
         (564 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311339.1| predicted protein [Populus trichocarpa] gi|2...   220   1e-55
emb|CBI27289.3| unnamed protein product [Vitis vinifera]              211   5e-53
ref|XP_002274151.1| PREDICTED: pentatricopeptide repeat-containi...   211   5e-53
ref|XP_004135146.1| PREDICTED: pentatricopeptide repeat-containi...   199   2e-49
ref|XP_002512079.1| pentatricopeptide repeat-containing protein,...   193   2e-47

>ref|XP_002311339.1| predicted protein [Populus trichocarpa] gi|222851159|gb|EEE88706.1|
           predicted protein [Populus trichocarpa]
          Length = 654

 Score =  220 bits (561), Expect = 1e-55
 Identities = 109/181 (60%), Positives = 138/181 (76%), Gaps = 2/181 (1%)
 Frame = -2

Query: 539 LKRQQFCTTPEIPTLYSFLQPSIFALKRNQPSQNPPKTL--QPIPKTLTPDQKTSFETTL 366
           L+R+ F TTPEIP LYSFLQP+IFALK+  PS   P T   +  PK LT D  T+ E+TL
Sbjct: 9   LRRRSFSTTPEIPNLYSFLQPTIFALKKTPPSTTNPATTTNRQTPKILTQDHITNLESTL 68

Query: 365 HNSIQTNDTDEAWKCFKILTSTSNYPSKNVSNSLIAHLSSLKDIHNLKRAFATVVFLLEK 186
           H S+ TN+T+EAW  FK LTS S +PSK+++NSLI HLSSL D  NLKRAFA++V+++EK
Sbjct: 69  HKSLITNNTNEAWASFKSLTSNSAFPSKSLTNSLITHLSSLNDTINLKRAFASIVYVIEK 128

Query: 185 NPSVLEYKTVETLLCSMCSANTAAPAFALVKSMFKNRFFLPFSVWGGVLIDISRKNSNFV 6
           NP  L+++TV+  L SM  ANTAAPAFAL+K MFKNRFF+PF +WG +LI+ISRKN   +
Sbjct: 129 NPKSLDFETVQLFLGSMVRANTAAPAFALIKCMFKNRFFMPFRLWGDILIEISRKNDKVI 188

Query: 5   A 3
           A
Sbjct: 189 A 189


>emb|CBI27289.3| unnamed protein product [Vitis vinifera]
          Length = 967

 Score =  211 bits (538), Expect = 5e-53
 Identities = 107/190 (56%), Positives = 144/190 (75%), Gaps = 3/190 (1%)
 Frame = -2

Query: 563 RTLSSILYLKRQQFCTTPE--IPTLYSFLQPSIFALKRNQPSQNPPKTLQPI-PKTLTPD 393
           R   ++ +  +++F +T E   PTLYSFLQPS+F+LK   P  + P++  P  PK L   
Sbjct: 3   RRAVAVRFAPQRRFSSTSESEFPTLYSFLQPSLFSLK---PIPSAPRSPHPTSPKPLQSP 59

Query: 392 QKTSFETTLHNSIQTNDTDEAWKCFKILTSTSNYPSKNVSNSLIAHLSSLKDIHNLKRAF 213
                E+ LH S+ TN+TDEAWK FK LT+ S +PSK+++NSLIAHL+SL D++NLKRAF
Sbjct: 60  APEDLESALHTSLSTNNTDEAWKSFKALTTNSTFPSKSLANSLIAHLASLHDLYNLKRAF 119

Query: 212 ATVVFLLEKNPSVLEYKTVETLLCSMCSANTAAPAFALVKSMFKNRFFLPFSVWGGVLID 33
           A+ VFLLEKNPS+L++ TV TLL SM SANTAAPAFAL+  MFKNR+F+PFS+WGGV+++
Sbjct: 120 ASAVFLLEKNPSLLDFGTVRTLLGSMNSANTAAPAFALINCMFKNRYFMPFSMWGGVIVE 179

Query: 32  ISRKNSNFVA 3
           I+R+N +FVA
Sbjct: 180 ITRRNRSFVA 189


>ref|XP_002274151.1| PREDICTED: pentatricopeptide repeat-containing protein At1g69290
           [Vitis vinifera]
          Length = 655

 Score =  211 bits (538), Expect = 5e-53
 Identities = 107/190 (56%), Positives = 144/190 (75%), Gaps = 3/190 (1%)
 Frame = -2

Query: 563 RTLSSILYLKRQQFCTTPE--IPTLYSFLQPSIFALKRNQPSQNPPKTLQPI-PKTLTPD 393
           R   ++ +  +++F +T E   PTLYSFLQPS+F+LK   P  + P++  P  PK L   
Sbjct: 3   RRAVAVRFAPQRRFSSTSESEFPTLYSFLQPSLFSLK---PIPSAPRSPHPTSPKPLQSP 59

Query: 392 QKTSFETTLHNSIQTNDTDEAWKCFKILTSTSNYPSKNVSNSLIAHLSSLKDIHNLKRAF 213
                E+ LH S+ TN+TDEAWK FK LT+ S +PSK+++NSLIAHL+SL D++NLKRAF
Sbjct: 60  APEDLESALHTSLSTNNTDEAWKSFKALTTNSTFPSKSLANSLIAHLASLHDLYNLKRAF 119

Query: 212 ATVVFLLEKNPSVLEYKTVETLLCSMCSANTAAPAFALVKSMFKNRFFLPFSVWGGVLID 33
           A+ VFLLEKNPS+L++ TV TLL SM SANTAAPAFAL+  MFKNR+F+PFS+WGGV+++
Sbjct: 120 ASAVFLLEKNPSLLDFGTVRTLLGSMNSANTAAPAFALINCMFKNRYFMPFSMWGGVIVE 179

Query: 32  ISRKNSNFVA 3
           I+R+N +FVA
Sbjct: 180 ITRRNRSFVA 189


>ref|XP_004135146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g69290-like [Cucumis sativus]
           gi|449517162|ref|XP_004165615.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g69290-like [Cucumis sativus]
          Length = 656

 Score =  199 bits (507), Expect = 2e-49
 Identities = 102/182 (56%), Positives = 135/182 (74%), Gaps = 4/182 (2%)
 Frame = -2

Query: 539 LKRQQFCTTPEIP-TLYSFLQPSIFALKRN--QPSQNPPKTLQ-PIPKTLTPDQKTSFET 372
           +  + F + PE P +LYSFLQPS+FA KR    PSQ+     Q P P+ LTPD     ET
Sbjct: 9   IPHRSFSSVPENPPSLYSFLQPSLFARKRTPFSPSQDSTDLRQDPTPQNLTPDGVAVVET 68

Query: 371 TLHNSIQTNDTDEAWKCFKILTSTSNYPSKNVSNSLIAHLSSLKDIHNLKRAFATVVFLL 192
            LH S+ T+DTDEAWK FK+LT +S +PSK+++NSLIAHLSS+ D+HNLKRAFA+VVF++
Sbjct: 69  ALHKSLLTSDTDEAWKSFKLLTRSSAFPSKSLTNSLIAHLSSIGDVHNLKRAFASVVFVI 128

Query: 191 EKNPSVLEYKTVETLLCSMCSANTAAPAFALVKSMFKNRFFLPFSVWGGVLIDISRKNSN 12
           EK P +L++ +V+ LL SM  ANTAAPA +L+K MFKNR F+PFSVWG  L+DI R++ +
Sbjct: 129 EKKPELLDFGSVKALLASMKCANTAAPALSLIKCMFKNRCFVPFSVWGKELVDICRQSGS 188

Query: 11  FV 6
            +
Sbjct: 189 LI 190


>ref|XP_002512079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223549259|gb|EEF50748.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 650

 Score =  193 bits (490), Expect = 2e-47
 Identities = 103/187 (55%), Positives = 139/187 (74%), Gaps = 4/187 (2%)
 Frame = -2

Query: 551 SILYLKRQQFCTTPEIPTLYSFLQPSIFALKR---NQPSQNPPKTLQPIPKTLTPDQKTS 381
           +I +L  + F T+    TLYSFLQP+IF LK+   +  +  PP TLQ    +L  D   +
Sbjct: 6   AINFLPNRTFSTS----TLYSFLQPTIFTLKKPTTDPTNTTPPPTLQ----SLNLDHVAT 57

Query: 380 FETTLHNSIQTNDTDEAWKCFKILTSTSNY-PSKNVSNSLIAHLSSLKDIHNLKRAFATV 204
            E+T+HNS+ TNDTD+AWK FK LTS S+Y PSK+++NSLI HLSSL+D  NLKRAFA+V
Sbjct: 58  LESTIHNSLLTNDTDQAWKSFKFLTSNSSYFPSKSLANSLITHLSSLQDTLNLKRAFASV 117

Query: 203 VFLLEKNPSVLEYKTVETLLCSMCSANTAAPAFALVKSMFKNRFFLPFSVWGGVLIDISR 24
           +F +EKNP  L+++TV+++L SM  AN+AAPAFALVK MFK+R+F+PF +WGG++  IS+
Sbjct: 118 IFFMEKNPQSLDFETVQSVLESMKFANSAAPAFALVKCMFKHRYFMPFHLWGGLIGHISK 177

Query: 23  KNSNFVA 3
           KN  FVA
Sbjct: 178 KNGMFVA 184