BLASTX nr result

ID: Coptis25_contig00028819 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028819
         (311 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633415.1| PREDICTED: uncharacterized protein At5g08430...    69   5e-10
emb|CBI29667.3| unnamed protein product [Vitis vinifera]               69   5e-10
ref|XP_003537424.1| PREDICTED: uncharacterized protein At5g08430...    66   3e-09
ref|XP_003600613.1| Zinc finger CCCH domain-containing protein [...    62   4e-08
ref|XP_003600617.1| Zinc finger CCCH domain-containing protein [...    62   5e-08

>ref|XP_003633415.1| PREDICTED: uncharacterized protein At5g08430-like [Vitis vinifera]
          Length = 785

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 29/39 (74%), Positives = 33/39 (84%)
 Frame = -3

Query: 117 RGRSVAKKKEEIAEDYCFVCKDGGLLLVCDFKHCIKSYH 1
           R R    KKEEIAEDYCFVCKDGGLL+VCD+K C+K+YH
Sbjct: 3   RRRRSKIKKEEIAEDYCFVCKDGGLLMVCDYKDCLKAYH 41


>emb|CBI29667.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 29/39 (74%), Positives = 33/39 (84%)
 Frame = -3

Query: 117 RGRSVAKKKEEIAEDYCFVCKDGGLLLVCDFKHCIKSYH 1
           R R    KKEEIAEDYCFVCKDGGLL+VCD+K C+K+YH
Sbjct: 3   RRRRSKIKKEEIAEDYCFVCKDGGLLMVCDYKDCLKAYH 41


>ref|XP_003537424.1| PREDICTED: uncharacterized protein At5g08430-like [Glycine max]
          Length = 520

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 24/37 (64%), Positives = 34/37 (91%)
 Frame = -3

Query: 111 RSVAKKKEEIAEDYCFVCKDGGLLLVCDFKHCIKSYH 1
           + + +KKEEIAED+CFVCKDGGLL+VC+++ C+K+YH
Sbjct: 3   KKIKRKKEEIAEDWCFVCKDGGLLMVCEYRDCLKAYH 39


>ref|XP_003600613.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355489661|gb|AES70864.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 814

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 25/33 (75%), Positives = 29/33 (87%)
 Frame = -3

Query: 99  KKKEEIAEDYCFVCKDGGLLLVCDFKHCIKSYH 1
           +KKEEIAEDYCFVCKDGG + VCDF  C+K+YH
Sbjct: 8   RKKEEIAEDYCFVCKDGGEMRVCDFGDCLKTYH 40


>ref|XP_003600617.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355489665|gb|AES70868.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 379

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 24/37 (64%), Positives = 32/37 (86%)
 Frame = -3

Query: 111 RSVAKKKEEIAEDYCFVCKDGGLLLVCDFKHCIKSYH 1
           R+  ++KEEI+EDYCF CKDGG L VCDF++C+K+YH
Sbjct: 4   RNNKRRKEEISEDYCFFCKDGGELRVCDFRNCLKTYH 40


Top