BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028795
         (629 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    89   7e-16
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    88   1e-15
gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    80   3e-13
ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus c...    77   3e-12
ref|XP_002524702.1| nuclease, putative [Ricinus communis] gi|223...    76   6e-12

>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 89.0 bits (219), Expect = 7e-16
 Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 3/141 (2%)
 Frame = -1

Query: 542 LKINTDGCSRGNPGRSGWGFVFRNYKGEFLGAAAGGMGTSTNYMAETMAIVQAIKQALEL 363
           +KIN DG + G P     G VFRN++   LG  A  +G +T + AE  A + AI++++E 
Sbjct: 11  VKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSIEY 70

Query: 362 GWRYIWVECDSSSVVQAFQNNK-MHWRVKEICKSLMGQAKWIN--VTPSWRETNLGADSC 192
             R IW+E DS  VV+AF +++ + W+++    + +  A+ I    T   RE N GADS 
Sbjct: 71  NLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGNAGADSL 130

Query: 191 AKQGAALSQGDSIWWESRPSF 129
           AK G +L+   S WW S P F
Sbjct: 131 AKNGKSLALLTSQWWSSSPLF 151


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 1/167 (0%)
 Frame = -1

Query: 629  ILRHFKLQHKLRRAPKIFECFWLLPPPSILKINTDGCSRGNPGRSGWGFVFRNYKGEFLG 450
            IL  F +  + R+   I    W  P P +LK+NTDG   G  G +  G +FR+  G FLG
Sbjct: 994  ILEEFSVSPRHRKYKDIILVLWKNPSPPLLKVNTDGSVVG--GLAACGGLFRDSSGSFLG 1051

Query: 449  AAAGGMGTSTNYMAETMAIVQAIKQALELGWRYIWVECDSSSVVQAFQNNKM-HWRVKEI 273
            A +  +G ++ + AET+A + A++ A   GWR +W+E DS+S +  F N+ +  W ++  
Sbjct: 1052 AFSCNIGLASVFHAETLAFILALEHAAHHGWRNLWLESDSTSALMIFSNSSLVQWLLRNR 1111

Query: 272  CKSLMGQAKWINVTPSWRETNLGADSCAKQGAALSQGDSIWWESRPS 132
              +       +  +    E N  AD+ A  G  + QG SIW E+ P+
Sbjct: 1112 WHNAQRLGIQVISSHILHEGNRCADNLANMGHGI-QG-SIWLETLPT 1156


>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 57/162 (35%), Positives = 78/162 (48%), Gaps = 8/162 (4%)
 Frame = -1

Query: 629 ILRHFKLQHKLRRAPKIFECFWLLPPPSILKINTDGCSRGNPGRSGWGFVFRNYKGEFLG 450
           + R F +  K  R     E  W+ P    +KIN DG   G+P     G +FR  +  F G
Sbjct: 224 LARLFSIPFKTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCG 283

Query: 449 AAAGGMGTSTNYMAETMAIVQAIKQALELGWRYIWVECDSSSVVQAFQNN-----KMHWR 285
           A A  +G +T   AE  A + AI++A EL    IW+E DS +V++AF  N     KMH R
Sbjct: 284 AFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIR 343

Query: 284 VKE---ICKSLMGQAKWINVTPSWRETNLGADSCAKQGAALS 168
                  C+S+      +N     RE NL AD+ AK G  L+
Sbjct: 344 WHNCLLFCRSIRSLCTHVN-----REGNLVADALAKNGQGLA 380


>ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus communis]
           gi|223538579|gb|EEF40183.1| hypothetical protein
           RCOM_1732210 [Ricinus communis]
          Length = 95

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 37/89 (41%), Positives = 53/89 (59%)
 Frame = -1

Query: 587 PKIFECFWLLPPPSILKINTDGCSRGNPGRSGWGFVFRNYKGEFLGAAAGGMGTSTNYMA 408
           PKIF   W  PPPS +K+N++G +RG PG +G G +FRN +G   G     + T+  ++A
Sbjct: 2   PKIFTIKWHPPPPSWIKLNSNGATRGAPGTTGVGGLFRNCRGVVKGCFIVPLSTTYAFVA 61

Query: 407 ETMAIVQAIKQALELGWRYIWVECDSSSV 321
           E  A +  I +A   GW  IW+E DS+ V
Sbjct: 62  EIKAAIYGIDKAYNFGWNKIWLESDSTYV 90


>ref|XP_002524702.1| nuclease, putative [Ricinus communis] gi|223536063|gb|EEF37721.1|
           nuclease, putative [Ricinus communis]
          Length = 201

 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 50/154 (32%), Positives = 72/154 (46%), Gaps = 10/154 (6%)
 Frame = -1

Query: 566 WLLPPPSILKINTDGCSRGNPGRSGWGFVFRNYKGEFLGAAAGGMGTSTNYMAETMAIVQ 387
           W  P     K+N DG  +G  G+   G VFRN+K EFL   A  +G ST+ +AE  A+ +
Sbjct: 34  WEKPQVGWTKLNFDGSCKGREGKGSIGGVFRNHKAEFLLGYAESIGRSTSTIAELAALRR 93

Query: 386 AIKQALELGWRYIWVECDSSSVVQAFQNNKMHWRVKEICKSLMGQAKWIN---------- 237
            ++  LE GW  +W+E D+ ++++         R K  C  +      IN          
Sbjct: 94  GLELVLENGWSNVWLEGDAKTLLEIIVK-----RRKVRCAQMQRHVSDINLIIPELDNCI 148

Query: 236 VTPSWRETNLGADSCAKQGAALSQGDSIWWESRP 135
           V+  +RE N  AD  A+ G  L Q   IWW   P
Sbjct: 149 VSHVYREGNRAADKLAQIGHQL-QKPKIWWHIPP 181