BLASTX nr result
ID: Coptis25_contig00028780
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00028780
(1376 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_001779388.1| predicted protein [Physcomitrella patens sub... 118 3e-24
ref|NP_001151785.1| LOC100285420 [Zea mays] gi|195649671|gb|ACG4... 118 4e-24
emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group] 115 2e-23
gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indi... 115 2e-23
ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group] g... 115 2e-23
>ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein
[Physcomitrella patens subsp. patens]
Length = 650
Score = 118 bits (296), Expect = 3e-24
Identities = 86/294 (29%), Positives = 140/294 (47%), Gaps = 27/294 (9%)
Frame = +1
Query: 451 QCMACLSNNNAAPGGSLINAALYVRDFDSGVTEKQLSELFSKYGEVISVEL------QEG 612
Q A ++ A P ++ +LYV D + V+E QL ELF++ G+V+S+ + +
Sbjct: 9 QQQAAQASAGAPPPAQFVSTSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRS 68
Query: 613 RRYAYVNFKRLEDAKTAKEVLMYEPINRNPNPLRIVMLSDQCEK---AKIWIKDLDSAVD 783
YAYVN+ +DA A E+L + +N NP + K A I+IK+LD +D
Sbjct: 69 LGYAYVNYNSAQDATRALELLNFSVLNGNPIRIMFSHRDPSIRKSGTANIFIKNLDKTID 128
Query: 784 CENLGLIFHQYGTVVSCE-------RSGEFGFVQFSEKKAALDAIAALNGSFINGISVDI 942
+ L F +G ++SC+ +S +GFVQF ++++AL AI +NG +N V +
Sbjct: 129 NKALHDTFSAFGGILSCKVAVDGSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFV 188
Query: 943 VPYIXXXXXXXXXXXXXXXPTLYVKYMPVGASPYKLCVVFAAYGTVADVHFVLNFDECCT 1122
P++ +YVK + + L VF AYGT++ + + D
Sbjct: 189 GPFVRRQERDQSGGVSKFN-NVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSK 247
Query: 1123 GACYVKYKREDAAAVALVELNKLCHEGQNWF-----------AELMSNSEQERK 1251
+V ++ D AA A+ LN + + W+ AEL + EQERK
Sbjct: 248 CFGFVNFEHPDNAAKAVEALNGKKRDEKEWYVGRAQKKSEREAELRAKFEQERK 301
>ref|NP_001151785.1| LOC100285420 [Zea mays] gi|195649671|gb|ACG44303.1|
polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding
protein 2 [Zea mays]
Length = 660
Score = 118 bits (295), Expect = 4e-24
Identities = 84/275 (30%), Positives = 136/275 (49%), Gaps = 21/275 (7%)
Frame = +1
Query: 499 LINAALYVRDFDSGVTEKQLSELFSKYGEVISVEL------QEGRRYAYVNFKRLEDAKT 660
L +LYV D + V++ QL ELFS+ G+V+SV + + YAYVNF DA
Sbjct: 37 LPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAAR 96
Query: 661 AKEVLMYEPINRNPNPLRIVML-----SDQCEKAKIWIKDLDSAVDCENLGLIFHQYGTV 825
A EVL + P+N P +R++ S + A I+IK+LD +D ++L F +GT+
Sbjct: 97 ALEVLNFAPLNNKP--IRVMYSNRDPSSRRSGSANIFIKNLDKMIDNKSLHETFSSFGTI 154
Query: 826 VSCE-------RSGEFGFVQFSEKKAALDAIAALNGSFINGISVDIVPYIXXXXXXXXXX 984
+SC+ +S FGFVQ+ +++AA +AI +LNG IN V + P++
Sbjct: 155 LSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSFD 214
Query: 985 XXXXXPTLYVKYMPVGASPYKLCVVFAAYGTVADVHFVLNFDECCTGACYVKYKREDAAA 1164
++VK + + L +F YG + ++ D ++ ++ DAA+
Sbjct: 215 KTKFN-NVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFGFINFENPDAAS 273
Query: 1165 VALVELNKLCHEGQNWF---AELMSNSEQERKRPY 1260
A+ ELN + W+ A+ S E E KR +
Sbjct: 274 RAVQELNGKKINDKEWYVGRAQKKSEREMELKRRF 308
>emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 115 bits (289), Expect = 2e-23
Identities = 92/306 (30%), Positives = 142/306 (46%), Gaps = 38/306 (12%)
Frame = +1
Query: 457 MACLSNNNAAPGGSLINAA-----------------LYVRDFDSGVTEKQLSELFSKYGE 585
MA ++ N +PG AA LYV D ++ VT+ QL ELFS+ G+
Sbjct: 5 MAAVAVNGGSPGAVTAAAAAGGVGVAVGLGGGGAQSLYVGDLEASVTDSQLYELFSQAGQ 64
Query: 586 VISVEL------QEGRRYAYVNFKRLEDAKTAKEVLMYEPINRNPNPLRIVM-----LSD 732
V+SV + + YAYVNF DA A E+L + P+ N P+R++ S
Sbjct: 65 VMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELLNFAPL--NGKPIRVMYSNRDPSSR 122
Query: 733 QCEKAKIWIKDLDSAVDCENLGLIFHQYGTVVSCE-------RSGEFGFVQFSEKKAALD 891
+ A I+IK+LD A+D + L F +G ++SC+ +S FGFVQ+ + +AA
Sbjct: 123 RSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQS 182
Query: 892 AIAALNGSFINGISVDIVPYIXXXXXXXXXXXXXXXPTLYVKYMPVGASPYKLCVVFAAY 1071
AI +LNG IN V + P++ ++VK + + L +F AY
Sbjct: 183 AIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFN-NVFVKNLSESTTKEDLVKIFGAY 241
Query: 1072 GTVADVHFVLNFDECCTGACYVKYKREDAAAVALVELNKLCHEGQNWF---AELMSNSEQ 1242
G + ++ D ++ +K D AA A+ ELN + W+ A+ S E
Sbjct: 242 GNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREI 301
Query: 1243 ERKRPY 1260
E KR +
Sbjct: 302 ELKRRF 307
>gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 115 bits (289), Expect = 2e-23
Identities = 92/306 (30%), Positives = 142/306 (46%), Gaps = 38/306 (12%)
Frame = +1
Query: 457 MACLSNNNAAPGGSLINAA-----------------LYVRDFDSGVTEKQLSELFSKYGE 585
MA ++ N +PG AA LYV D ++ VT+ QL ELFS+ G+
Sbjct: 5 MAAVAVNGGSPGAVTAAAAAGGVGVAVGLGGGGAQSLYVGDLEASVTDSQLYELFSQAGQ 64
Query: 586 VISVEL------QEGRRYAYVNFKRLEDAKTAKEVLMYEPINRNPNPLRIVM-----LSD 732
V+SV + + YAYVNF DA A E+L + P+ N P+R++ S
Sbjct: 65 VMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELLNFAPL--NGKPIRVMYSNRDPSSR 122
Query: 733 QCEKAKIWIKDLDSAVDCENLGLIFHQYGTVVSCE-------RSGEFGFVQFSEKKAALD 891
+ A I+IK+LD A+D + L F +G ++SC+ +S FGFVQ+ + +AA
Sbjct: 123 RSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQS 182
Query: 892 AIAALNGSFINGISVDIVPYIXXXXXXXXXXXXXXXPTLYVKYMPVGASPYKLCVVFAAY 1071
AI +LNG IN V + P++ ++VK + + L +F AY
Sbjct: 183 AIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFN-NVFVKNLSESTTKEDLVKIFGAY 241
Query: 1072 GTVADVHFVLNFDECCTGACYVKYKREDAAAVALVELNKLCHEGQNWF---AELMSNSEQ 1242
G + ++ D ++ +K D AA A+ ELN + W+ A+ S E
Sbjct: 242 GNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREI 301
Query: 1243 ERKRPY 1260
E KR +
Sbjct: 302 ELKRRF 307
>ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza
sativa Japonica Group] gi|113564819|dbj|BAF15162.1|
Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 659
Score = 115 bits (289), Expect = 2e-23
Identities = 92/306 (30%), Positives = 142/306 (46%), Gaps = 38/306 (12%)
Frame = +1
Query: 457 MACLSNNNAAPGGSLINAA-----------------LYVRDFDSGVTEKQLSELFSKYGE 585
MA ++ N +PG AA LYV D ++ VT+ QL ELFS+ G+
Sbjct: 5 MAAVAVNGGSPGAVTAAAAAGGVGVAVGLGGGGAQSLYVGDLEASVTDSQLYELFSQAGQ 64
Query: 586 VISVEL------QEGRRYAYVNFKRLEDAKTAKEVLMYEPINRNPNPLRIVM-----LSD 732
V+SV + + YAYVNF DA A E+L + P+ N P+R++ S
Sbjct: 65 VMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELLNFAPL--NGKPIRVMYSNRDPSSR 122
Query: 733 QCEKAKIWIKDLDSAVDCENLGLIFHQYGTVVSCE-------RSGEFGFVQFSEKKAALD 891
+ A I+IK+LD A+D + L F +G ++SC+ +S FGFVQ+ + +AA
Sbjct: 123 RSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQS 182
Query: 892 AIAALNGSFINGISVDIVPYIXXXXXXXXXXXXXXXPTLYVKYMPVGASPYKLCVVFAAY 1071
AI +LNG IN V + P++ ++VK + + L +F AY
Sbjct: 183 AIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFN-NVFVKNLSESTTKEDLVKIFGAY 241
Query: 1072 GTVADVHFVLNFDECCTGACYVKYKREDAAAVALVELNKLCHEGQNWF---AELMSNSEQ 1242
G + ++ D ++ +K D AA A+ ELN + W+ A+ S E
Sbjct: 242 GNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREI 301
Query: 1243 ERKRPY 1260
E KR +
Sbjct: 302 ELKRRF 307