BLASTX nr result
ID: Coptis25_contig00028685
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00028685
(603 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR23806.1| initiation factor eIF4A-15 [Helianthus annuus] 220 9e-63
ref|XP_003522265.1| PREDICTED: eukaryotic initiation factor 4A-1... 220 1e-62
sp|Q40465.1|IF411_TOBAC RecName: Full=Eukaryotic initiation fact... 219 2e-62
ref|XP_002524306.1| dead box ATP-dependent RNA helicase, putativ... 219 2e-62
ref|NP_001105396.1| translational initiation factor eIF-4A [Zea ... 219 3e-62
>gb|AAR23806.1| initiation factor eIF4A-15 [Helianthus annuus]
Length = 413
Score = 220 bits (561), Expect(2) = 9e-63
Identities = 113/128 (88%), Positives = 121/128 (94%)
Frame = -3
Query: 538 SEGLDVIQQAQSGTGKTATFCSGILQQLDYCSVYCQALVLAPTRELAQQIERVM*ALGDY 359
++GLDVIQQAQSGTGKTATFCSGILQQLDY V CQALVLAPTRELAQQIE+VM ALGDY
Sbjct: 75 TKGLDVIQQAQSGTGKTATFCSGILQQLDYNVVECQALVLAPTRELAQQIEKVMRALGDY 134
Query: 358 LEVRVHACVGGTSVREDQRILSDGVHVVVGTPGRVFDMLRRRSLPANDIKMFVLDEADEM 179
L V+VHACVGGTSVREDQRILS GVHVVVGTPGRVFDMLRR+SL +++IKMFVLDEADEM
Sbjct: 135 LGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRSDNIKMFVLDEADEM 194
Query: 178 LSRGFKDQ 155
LSRGFKDQ
Sbjct: 195 LSRGFKDQ 202
Score = 45.8 bits (107), Expect(2) = 9e-63
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -2
Query: 602 RGIYACGFEKPSAIQQRGIVPF 537
RGIYA GFEKPSAIQQRGIVPF
Sbjct: 53 RGIYAYGFEKPSAIQQRGIVPF 74
Score = 72.4 bits (176), Expect = 6e-11
Identities = 34/51 (66%), Positives = 45/51 (88%), Gaps = 1/51 (1%)
Frame = -2
Query: 152 MAGLEPEGSQFDAQRYDSRMNELLSSDGQD-IESYDVVHETFNAMGLHENL 3
MAG+ PEGSQFDA+++DS+MN+LLS+DGQD SYD V+++F+AMGL ENL
Sbjct: 1 MAGVAPEGSQFDARQFDSKMNDLLSADGQDFFTSYDEVYDSFDAMGLQENL 51
>ref|XP_003522265.1| PREDICTED: eukaryotic initiation factor 4A-11-like [Glycine max]
Length = 413
Score = 220 bits (560), Expect(2) = 1e-62
Identities = 111/127 (87%), Positives = 120/127 (94%)
Frame = -3
Query: 535 EGLDVIQQAQSGTGKTATFCSGILQQLDYCSVYCQALVLAPTRELAQQIERVM*ALGDYL 356
+GLDVIQQAQSGTGKTATFCSG+LQQLDY V CQALVLAPTRELAQQIE+VM ALGDYL
Sbjct: 76 KGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYL 135
Query: 355 EVRVHACVGGTSVREDQRILSDGVHVVVGTPGRVFDMLRRRSLPANDIKMFVLDEADEML 176
V+VHACVGGTSVREDQRILS GVHVVVGTPGRVFDMLRR+SL +++I+MFVLDEADEML
Sbjct: 136 GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRSDNIRMFVLDEADEML 195
Query: 175 SRGFKDQ 155
SRGFKDQ
Sbjct: 196 SRGFKDQ 202
Score = 45.8 bits (107), Expect(2) = 1e-62
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -2
Query: 602 RGIYACGFEKPSAIQQRGIVPF 537
RGIYA GFEKPSAIQQRGIVPF
Sbjct: 53 RGIYAYGFEKPSAIQQRGIVPF 74
Score = 72.8 bits (177), Expect = 4e-11
Identities = 36/51 (70%), Positives = 43/51 (84%), Gaps = 1/51 (1%)
Frame = -2
Query: 152 MAGLEPEGSQFDAQRYDSRMNELLSSDGQD-IESYDVVHETFNAMGLHENL 3
MAGL PEGSQFDA++YD++MNELL +DGQD SYD V E+F+AMGL ENL
Sbjct: 1 MAGLAPEGSQFDARQYDAKMNELLGTDGQDFFTSYDEVCESFDAMGLQENL 51
>sp|Q40465.1|IF411_TOBAC RecName: Full=Eukaryotic initiation factor 4A-11; Short=eIF-4A-11;
AltName: Full=ATP-dependent RNA helicase eIF4A-11
gi|485987|emb|CAA55737.1| unnamed protein product
[Nicotiana tabacum]
Length = 413
Score = 219 bits (558), Expect(2) = 2e-62
Identities = 112/127 (88%), Positives = 118/127 (92%)
Frame = -3
Query: 535 EGLDVIQQAQSGTGKTATFCSGILQQLDYCSVYCQALVLAPTRELAQQIERVM*ALGDYL 356
+GLDVIQQAQSGTGKTATFCSGILQQLDY V CQALVLAPTRELAQQIE+VM ALGDYL
Sbjct: 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYL 135
Query: 355 EVRVHACVGGTSVREDQRILSDGVHVVVGTPGRVFDMLRRRSLPANDIKMFVLDEADEML 176
V+VHACVGGTSVREDQRIL GVHVVVGTPGRVFDMLRR+SL ++IKMFVLDEADEML
Sbjct: 136 GVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEML 195
Query: 175 SRGFKDQ 155
SRGFKDQ
Sbjct: 196 SRGFKDQ 202
Score = 45.8 bits (107), Expect(2) = 2e-62
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -2
Query: 602 RGIYACGFEKPSAIQQRGIVPF 537
RGIYA GFEKPSAIQQRGIVPF
Sbjct: 53 RGIYAYGFEKPSAIQQRGIVPF 74
Score = 66.2 bits (160), Expect = 4e-09
Identities = 32/51 (62%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
Frame = -2
Query: 152 MAGLEPEGSQFDAQRYDSRMNELLSSDGQD-IESYDVVHETFNAMGLHENL 3
MAGL PEGSQFDA++YD++M ELL ++ Q+ SYD V+E+F+AMGL ENL
Sbjct: 1 MAGLAPEGSQFDARQYDAKMTELLGTEQQEFFTSYDEVYESFDAMGLQENL 51
>ref|XP_002524306.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223536397|gb|EEF38046.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 406
Score = 219 bits (558), Expect(2) = 2e-62
Identities = 111/127 (87%), Positives = 119/127 (93%)
Frame = -3
Query: 535 EGLDVIQQAQSGTGKTATFCSGILQQLDYCSVYCQALVLAPTRELAQQIERVM*ALGDYL 356
+GLDVIQQAQSGTGKTATFCSG+LQQLDY V CQALVLAPTRELAQQI+ V+ ALGDYL
Sbjct: 68 KGLDVIQQAQSGTGKTATFCSGVLQQLDYGLVQCQALVLAPTRELAQQIDMVLRALGDYL 127
Query: 355 EVRVHACVGGTSVREDQRILSDGVHVVVGTPGRVFDMLRRRSLPANDIKMFVLDEADEML 176
+V+VHACVGGTSVREDQRIL GVHVVVGTPGRVFDMLRR+SLPA+ IKMFVLDEADEML
Sbjct: 128 DVKVHACVGGTSVREDQRILRAGVHVVVGTPGRVFDMLRRQSLPADYIKMFVLDEADEML 187
Query: 175 SRGFKDQ 155
SRGFKDQ
Sbjct: 188 SRGFKDQ 194
Score = 45.8 bits (107), Expect(2) = 2e-62
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -2
Query: 602 RGIYACGFEKPSAIQQRGIVPF 537
RGIYA GFEKPSAIQQRGIVPF
Sbjct: 45 RGIYAYGFEKPSAIQQRGIVPF 66
>ref|NP_001105396.1| translational initiation factor eIF-4A [Zea mays]
gi|2341061|gb|AAB67607.1| translational initiation
factor eIF-4A [Zea mays]
Length = 414
Score = 219 bits (557), Expect(2) = 3e-62
Identities = 112/127 (88%), Positives = 119/127 (93%)
Frame = -3
Query: 535 EGLDVIQQAQSGTGKTATFCSGILQQLDYCSVYCQALVLAPTRELAQQIERVM*ALGDYL 356
+GLDVIQQAQSGTGKTATFCSGILQQLDY V CQALVLAPTRELAQQIE+VM ALGDYL
Sbjct: 77 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL 136
Query: 355 EVRVHACVGGTSVREDQRILSDGVHVVVGTPGRVFDMLRRRSLPANDIKMFVLDEADEML 176
V+VHACVGGTSVREDQRIL+ GVHVVVGTPGRVFDMLRR+SL ++IKMFVLDEADEML
Sbjct: 137 GVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEML 196
Query: 175 SRGFKDQ 155
SRGFKDQ
Sbjct: 197 SRGFKDQ 203
Score = 45.8 bits (107), Expect(2) = 3e-62
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = -2
Query: 602 RGIYACGFEKPSAIQQRGIVPF 537
RGIYA GFEKPSAIQQRGIVPF
Sbjct: 54 RGIYAYGFEKPSAIQQRGIVPF 75
Score = 60.5 bits (145), Expect = 2e-07
Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Frame = -2
Query: 152 MAGLEPEGSQFDAQRYDSRMNELLSSDGQD--IESYDVVHETFNAMGLHENL 3
MAG+ PEGSQFDA+ YDS+M ELLS+ + SYD V E+F+ MGL ENL
Sbjct: 1 MAGMAPEGSQFDAKHYDSKMQELLSTGETEEFFTSYDEVFESFDDMGLQENL 52