BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028682
         (478 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276972.2| PREDICTED: probable DEAD-box ATP-dependent R...   143   2e-32
ref|XP_002509758.1| dead box ATP-dependent RNA helicase, putativ...   133   1e-29
ref|XP_002298050.1| predicted protein [Populus trichocarpa] gi|2...   131   6e-29
ref|NP_176514.1| putative DEAD-box ATP-dependent RNA helicase 48...   122   3e-26
ref|XP_002886414.1| hypothetical protein ARALYDRAFT_315081 [Arab...   121   7e-26

>ref|XP_002276972.2| PREDICTED: probable DEAD-box ATP-dependent RNA helicase 48-like
           [Vitis vinifera] gi|297742558|emb|CBI34707.3| unnamed
           protein product [Vitis vinifera]
          Length = 754

 Score =  143 bits (360), Expect = 2e-32
 Identities = 76/147 (51%), Positives = 96/147 (65%), Gaps = 6/147 (4%)
 Frame = +3

Query: 36  TNLLSNFTIFRYMGGGPRTFPGGLNKWQWXXXXXXXXXXXXXXXXDQEKQLYHARIRTQI 215
           + LL  F   R MGGGPRTFPGG+NKWQW                D EKQLY ARIR+QI
Sbjct: 14  SKLLCTFFFARPMGGGPRTFPGGINKWQWKRLHEKKAREKEKRLLDHEKQLYEARIRSQI 73

Query: 216 RAKVAGEQFQEENGTSNSNSDYTAMSAQDQVKALANRFMKEGAEDLWNEDDGPVKSAP-M 392
           RAK+AG+   E +  S+ + ++  MS QD +KALA+RFMKEGAEDLWN+DDGPVKS P +
Sbjct: 74  RAKLAGKPVSEFSPDSD-HPNHNPMSPQDHIKALADRFMKEGAEDLWNDDDGPVKSPPLL 132

Query: 393 ARQP-----RRFDSNIDLRKIVHDGRN 458
            R+P     R+ +  +DLRK+   GR+
Sbjct: 133 PRRPSNGLSRQIEPPVDLRKLTSHGRS 159


>ref|XP_002509758.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223549657|gb|EEF51145.1| dead box ATP-dependent RNA
           helicase, putative [Ricinus communis]
          Length = 771

 Score =  133 bits (335), Expect = 1e-29
 Identities = 76/165 (46%), Positives = 99/165 (60%), Gaps = 13/165 (7%)
 Frame = +3

Query: 21  QKKPITNLLSNFTIFRYMGGGPRTFPGGLNKWQWXXXXXXXXXXXXXXXXDQEKQLYHAR 200
           + K +++ L      R MGGGPRTFPGGLNKWQW                +QEKQLY AR
Sbjct: 11  RSKTVSDHLQTRIFTRLMGGGPRTFPGGLNKWQWKRLHEKRAKEKEKSLLEQEKQLYQAR 70

Query: 201 IRTQIRAKVAGEQFQEENGTSNSNSDYTAMSAQDQVKALANRFMKEGAEDLWNEDDGPVK 380
           IR+QIR+K+AGE     N      ++Y+A S +D +KALA+RFMKEGAEDLWNEDDGP+ 
Sbjct: 71  IRSQIRSKLAGEPDSNPN-----TNNYSATSPKDHIKALADRFMKEGAEDLWNEDDGPLT 125

Query: 381 S-APMARQ----------PRRFDSNIDLRKIVHDGR--NDIEGLS 476
           S  P + Q          P   ++ IDLRK++ + R  ++ E LS
Sbjct: 126 SQLPKSNQRSGSIGSNQRPGSINTPIDLRKVMLEARSVHNFENLS 170


>ref|XP_002298050.1| predicted protein [Populus trichocarpa] gi|222845308|gb|EEE82855.1|
           predicted protein [Populus trichocarpa]
          Length = 784

 Score =  131 bits (329), Expect = 6e-29
 Identities = 70/154 (45%), Positives = 92/154 (59%), Gaps = 8/154 (5%)
 Frame = +3

Query: 21  QKKPITNLLSNFTIFRYMGGGPRTFPGGLNKWQWXXXXXXXXXXXXXXXXDQEKQLYHAR 200
           + K ++  L      R MGGGPRTFPGGLNKWQW                DQEKQLY AR
Sbjct: 8   RSKSLSEQLRTRIFIRLMGGGPRTFPGGLNKWQWKRLHEKKAKEKEKRLLDQEKQLYQAR 67

Query: 201 IRTQIRAKVAGEQFQEENGTSNSNSDYTAMSAQDQVKALANRFMKEGAEDLWNEDDGPVK 380
           +R+ IR+K+AG   Q +   +   S +  MS ++ +KALA+RFMKEGAEDLWNE DGP+K
Sbjct: 68  MRSNIRSKLAG---QPDPNLNPDPSKFNPMSPKEHIKALADRFMKEGAEDLWNEMDGPLK 124

Query: 381 SAPMAR--------QPRRFDSNIDLRKIVHDGRN 458
           +    R        +P   +S +DLRK++ +GRN
Sbjct: 125 APSDERPGFVGTNQRPGSINSPLDLRKLMSEGRN 158


>ref|NP_176514.1| putative DEAD-box ATP-dependent RNA helicase 48 [Arabidopsis
           thaliana] gi|75333533|sp|Q9C8S9.1|RH48_ARATH RecName:
           Full=Probable DEAD-box ATP-dependent RNA helicase 48
           gi|12324351|gb|AAG52143.1|AC022355_4 putative RNA
           helicase; 42376-45543 [Arabidopsis thaliana]
           gi|332195955|gb|AEE34076.1| putative DEAD-box
           ATP-dependent RNA helicase 48 [Arabidopsis thaliana]
          Length = 798

 Score =  122 bits (306), Expect = 3e-26
 Identities = 72/159 (45%), Positives = 89/159 (55%), Gaps = 11/159 (6%)
 Frame = +3

Query: 33  ITNLLSNFTIFRYMGGGPRTFPGGLNKWQWXXXXXXXXXXXXXXXXDQEKQLYHARIRTQ 212
           IT  L N    R MGGGPRTFPGGLNKWQW                DQEKQLY ARIRT+
Sbjct: 13  ITGSLWNRISSRNMGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTE 72

Query: 213 IRAKVAGEQFQEENGTSNSNSDYTAMSAQDQVKALANRFMKEGAEDLWNEDDGPVKSAPM 392
           IRAK+ G     E  T+ S   +  MS ++ +K LA+RFMK GAED WNE+DGPVK +  
Sbjct: 73  IRAKMWGNPDSGEK-TAKSKQSHGPMSPKEHIKTLADRFMKAGAEDFWNENDGPVKKSDQ 131

Query: 393 ARQ------PRRFDSNIDLRKIVHD-----GRNDIEGLS 476
             +          +S ID+R++V       G+N + G S
Sbjct: 132 GSRSGSDSIDSTSNSPIDVRRLVSATCDSMGKNRVFGSS 170


>ref|XP_002886414.1| hypothetical protein ARALYDRAFT_315081 [Arabidopsis lyrata subsp.
           lyrata] gi|297332255|gb|EFH62673.1| hypothetical protein
           ARALYDRAFT_315081 [Arabidopsis lyrata subsp. lyrata]
          Length = 793

 Score =  121 bits (303), Expect = 7e-26
 Identities = 68/140 (48%), Positives = 81/140 (57%), Gaps = 14/140 (10%)
 Frame = +3

Query: 66  RYMGGGPRTFPGGLNKWQWXXXXXXXXXXXXXXXXDQEKQLYHARIRTQIRAKVAGEQFQ 245
           R MGGGPRTFPGGLNKWQW                DQEKQLY ARIRT+IRAK+ G    
Sbjct: 24  RNMGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAKMWGNPDS 83

Query: 246 EENGTSNSNSDYTAMSAQDQVKALANRFMKEGAEDLWNEDDGPVKSAPMARQPRRFD--- 416
            E  T+ S   +  MS ++ +K LA+RFMK GAEDLWNE+DGPVK +       R D   
Sbjct: 84  GEK-TAKSKQSHGPMSPKEHIKTLADRFMKAGAEDLWNENDGPVKESDDGSGLTRRDNGR 142

Query: 417 -----------SNIDLRKIV 443
                      S+ID+RK+V
Sbjct: 143 SGSNSIVSSSNSSIDVRKLV 162