BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00028677
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containi...   157   7e-37
ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containi...   140   8e-32
ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containi...   140   8e-32
ref|XP_003625900.1| Pentatricopeptide repeat-containing protein ...   133   1e-29
emb|CBI36755.3| unnamed protein product [Vitis vinifera]               99   5e-19

>ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 468

 Score =  157 bits (398), Expect = 7e-37
 Identities = 70/117 (59%), Positives = 91/117 (77%)
 Frame = +2

Query: 2   LNTALLLFNQIHRPHIFICNSIIKAFSHSHSPQTSLSIYSYMNKNFIWPNNYTYPIILKT 181
           L++ALLLF    +PH+FICNS+I+AFSH+H+P T  SIY++M+ N I PNN+T+P +LK+
Sbjct: 59  LDSALLLFTHHSKPHVFICNSLIRAFSHNHTPHTPFSIYTHMHSNSILPNNFTFPFLLKS 118

Query: 182 LSDLKLIKQGQCVHTQTFKHGHMCDIYVLNSLLNVYSSCGDMHTCERLFDEMPERDV 352
           L+D K + +GQC+HT   K G   DIYV NSLLNVY+SCGDM  C R+FDEMP RDV
Sbjct: 119 LADFKGLSEGQCIHTHVVKLGQFDDIYVQNSLLNVYASCGDMGLCMRVFDEMPHRDV 175


>ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 464

 Score =  140 bits (354), Expect = 8e-32
 Identities = 63/117 (53%), Positives = 85/117 (72%)
 Frame = +2

Query: 2   LNTALLLFNQIHRPHIFICNSIIKAFSHSHSPQTSLSIYSYMNKNFIWPNNYTYPIILKT 181
           L +A L F  I +PH+FICNS+I+AFSHS  P T L +Y++MN+N I PNNYT+P +LK+
Sbjct: 60  LGSAFLFFTHIPKPHVFICNSLIRAFSHSKIPHTPLFLYTHMNRNSISPNNYTFPFVLKS 119

Query: 182 LSDLKLIKQGQCVHTQTFKHGHMCDIYVLNSLLNVYSSCGDMHTCERLFDEMPERDV 352
           L+D K +  GQ VHT   K GH  D+YV N+L++VY+SCG M  C+++FDEM   DV
Sbjct: 120 LADFKDLVGGQSVHTHVVKSGHASDLYVQNTLMDVYASCGKMGLCKKVFDEMLHTDV 176


>ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 464

 Score =  140 bits (354), Expect = 8e-32
 Identities = 63/117 (53%), Positives = 85/117 (72%)
 Frame = +2

Query: 2   LNTALLLFNQIHRPHIFICNSIIKAFSHSHSPQTSLSIYSYMNKNFIWPNNYTYPIILKT 181
           L +A L F  I +PH+FICNS+I+AFSHS  P T L +Y++MN+N I PNNYT+P +LK+
Sbjct: 60  LGSAFLFFTHIPKPHVFICNSLIRAFSHSKIPHTPLFLYTHMNRNSISPNNYTFPFVLKS 119

Query: 182 LSDLKLIKQGQCVHTQTFKHGHMCDIYVLNSLLNVYSSCGDMHTCERLFDEMPERDV 352
           L+D K +  GQ VHT   K GH  D+YV N+L++VY+SCG M  C+++FDEM   DV
Sbjct: 120 LADFKDLVGGQSVHTHVVKSGHASDLYVQNTLMDVYASCGKMGLCKKVFDEMLHTDV 176


>ref|XP_003625900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355500915|gb|AES82118.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 467

 Score =  133 bits (335), Expect = 1e-29
 Identities = 63/112 (56%), Positives = 83/112 (74%)
 Frame = +2

Query: 17  LLFNQIHRPHIFICNSIIKAFSHSHSPQTSLSIYSYMNKNFIWPNNYTYPIILKTLSDLK 196
           L  + I +PH+FI NS+I+AFSHSH P T LS+YS+M+KN I PNN+T+P + K+LSD  
Sbjct: 64  LFTHLIPKPHVFIFNSLIRAFSHSHIPNTPLSLYSHMHKNSILPNNFTFPFLFKSLSDSH 123

Query: 197 LIKQGQCVHTQTFKHGHMCDIYVLNSLLNVYSSCGDMHTCERLFDEMPERDV 352
              Q QCV+T   K G++ DIYV NSLL+VY+S G +  C +LFDEMP+RDV
Sbjct: 124 DFVQSQCVYTHVIKLGYVNDIYVNNSLLDVYASYGCLELCRQLFDEMPQRDV 175


>emb|CBI36755.3| unnamed protein product [Vitis vinifera]
          Length = 751

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 47/117 (40%), Positives = 73/117 (62%)
 Frame = +2

Query: 2   LNTALLLFNQIHRPHIFICNSIIKAFSHSHSPQTSLSIYSYMNKNFIWPNNYTYPIILKT 181
           LN A  +FNQI RP ++I NS+IK +S S SP  +L++Y  M +    P+++T+P +LK 
Sbjct: 55  LNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKA 114

Query: 182 LSDLKLIKQGQCVHTQTFKHGHMCDIYVLNSLLNVYSSCGDMHTCERLFDEMPERDV 352
            S +     GQCVH    K G   D+Y   +LL +Y++CGDM    ++FD++P+ +V
Sbjct: 115 CSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNV 171